Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1220 ATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGCCAGAGCTCGTCTTCTGTGCATGAAAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATATGCGTGAAAATGCATTTAGTGCTGTTGGATCTCATTCTCAGGCAGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGATCACTTTGTAAAGAAAATGAACTGAGGGTGAAAGTCTTGCTTGGAGGCTGTATTCCTCCATTGCTTGGTCTCCTAAAGTCCAGTTCTACTGAAGGCCGAATTGCCGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGCGCAAAAGATCACGTTGGTTCCAAAATATTTTCAACTGAAGGAGTAGTACCCGTGCTTTGGGAGCAGTTGCGAACTGGCCTGAAAACCGAAAATGTAGTTGAAAGTTTATTGACAGGAACATTGAAAAATCTCTCCAGCAGTGCTGAGGGATTCTGGAACTCAACAATTCAATCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCTAGTGTTTGCTTTTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCGAAGGTGTTGAGCGCAGAGGTGACTAAACAACTTTTGAAACTGTTGGGCCCTGGTAATGATGACCTTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTTCTCAGTGCAAAGAGGCAAGGCGGGAGATAGCCAGTTCTAATGGCATTCCTGCTCTGATCAATGCTACCATAGCTCCTTCAAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGCGCTTTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGTCATGCTCTTCTCCTACACAAATTGCCGACACTTTAGGAGCTATAGCATCAGCTCTTATGATATATGATAACAAGGCCGAATCTACGAAACCGTCAGATCCTTTGGTGGTTGAAGAGACGTTACTCAAACAATTCAAACCTCGCTTGCCTTTCCTTGTGCTAGAACGGACCATCGAAGCTCTTGCTAGTTTATACGGTAATTCCGTACTCTCAACTAAACTAGCAAATTCCGATGCAAAACGTTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACATTATGCAAAAGTGAAGGCAGTCTATGGCGCGCACTTCAGGGTCGTGAAGGAGTTCAACTTTTGATATCTCTTCTCGGCCTTTCATCAGAACAACAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCCAATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCGGCAAGAATCCTTAAGAATTTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGCGCAGATGCTGTTCCTGCATTGTTGTGGCTATTGAAAAACGGAAGTCCTAACGGGAAGGATATTGCAGCGAAGACCATAAATCACTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGCGACCTTCCTGATTCTAAGGTATATATTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCCCCTCTTAGTGACATTTTACGTGAAGGTAGTGCCTCCGGTGATGCATTTAACACCGTGATAATGTTATTGAGCTCTAACAAGGAAGAAACTCAGGCAAAATCTGCATCAGCTCTGGCTGAAATTTTCGAAGCAAGGAAAGATTTGCGTGAAAGTAGCATTGCTGTCAGAACTCTTTGTTCAGCCATGAAATTGCTTAATGTTGAATCTGAAAGTATCCTAATGGAGTCCTCAAACTGCATGGCTTCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTATTGCTAGAGATACATTAACCCCCCTAGTTGCTCTAGCTAACTCTTCGGTTTTGGAAGTGGCAGAGATGGCTATAGGTGCTGTAGCGAATCTTATTTTGGATACTGAAATAGCAAAGAAAGTTGTTCTAGAAGAAGTTATCTTGCCTGCCACCAGAGTATTACGTGAAGGCACAAATTCTGGGAAAACTCGTGCTGCAGCAGCTATCGCTCGCCTCTTACATTCTCAGAAAGTTGATAATGCTGTTACTGATTGTGTGAATCGCGCGGGCACTGTTCTTGCATTAGTTTCCTCTTTAGACTCTTCTGTCAATGAATCTGTTTCCACATCAGAGGCTCTAGAAGCACTTGCCATTCTTTCCAGGTCAGAAGAGACTGGTGGAAATGTTAAACCAGCATGTGCAATTTTAGCCGAATTCCCTCAAAACATAATCCCAATAGTACTGTGCATTGTTAATTCAACGCCGTCATTGCAAGATAAAACAATTGAGATTTTATCTCGATTGTGTAAAGATCAGCCTGTTATTTTAGGAGATACTGTTGCATCTGCCTCTGGATGTATATCTTCAATAGCTAAGAGGGTAATTAGTTCCTCAAATGTAAAAGTCAAAATTGGTGGAGTTGCGCTTCTTATTTGTGCTGCAAAACCAAATCATCGGAGACTGGTGGAGAATATCAATATATCAAACTTGTCTGCTAACCTTATTCAGTCTCTAGTTGATATCCTTATTTCTGCACAGTCTTCTTTTGGTAATGACGGTGATGACGATGACAAGGAATTCATCAGCATATGCAGGCGTACACAAGAAGAGGCCAACAGCCGTGAATCCAACACTGGAACTTCCATTATATGTGGTGTTGACTTAGCTATATGGTTGCTGTCTATTCTTGCATGTCACGATGAAAGAAATAAAATTGCTATAATGAAGGCTGGAGCAATTGATGTTCTCGCCGACAAGATCTCAAATTGTTACTCACAATATTCTCAGACTGAATACAAAGAAGATAGCAGTATGTGGATTTGTGCCTTGTTGTTGGCAATATTATTTCAAGACAGAGATATCATACGCGCACATTCAACCATAAAGTCTTTACCGGCTCTTGCCACTTTATTGAAGTCAGATGAATCAGCGAACAAATATTTTGCTGCACAATCAATAGCGAGCCTTGTTTGCAACGGTAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGCGGACTTATCTCTTTGCTTGGCCGTGCTGATACTGATATGCAGGATCTTCTGGAATTGTCAGAGGAATTTGCTTTGGTGCGTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGAAAGGCAATTCCTGCCCTGGTTGATCTTCTCAAACCAATTCCGGGTCGCCCAGGGGCACCATTTTTAGCTCTCGGAATTTTGACTCAGCTTGGCAGAGATTGCCCGTCAAATAAGACTGTAATGGTAGAATCTGGGGCTTTAGAGGCTCTTACAAAGTATCTTTCCCTTGGTCCACAAGATGCAACCGAAGAAGCTGCTACAGATCTACTAGGAATTCTCTTTAGTAGTGCTGATATACGAAAACATGACTCTGCATTTGGCGCTGTTAACCAACTTATAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTTTAGTGCTGCAAAAGCATTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCTGAGATTGCTCGACAAGCTATTCAACCCTTGGTAGAAATTCTTAACACTGGTTCAGAAAGGGAGCAGCATGCCGCAATTGCTGCATTGGTTGGGTTATTGAGTGAAAACCCATCTAGAGCACTTGCTGCTGCAGATGTTGAAATGAATGCAGTGGATGTTCTTTATAGGATCCTTTCGTCGAATTGTTCAATTGACCTGATAGGTGATGCTGCTGAGTTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACAACAGCTGCTACCCGATGTGTTGAACCACTAGTCGCTCTGCTTGCAACCGAGTTTAGTCCTGCTCATCATTCAGTTGTTCGGGCACTGGATAGGCTCGTTGATGATGAGCAAGTGGCTGAACTAATTGCCACACACAGTGCAGTTGTCCCTCTTGTTAGTCTACTGTCTGGTAGAAACTTTGTACTTCACGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTCATTGAAAGCATACTGGACATCTTACACGAAGCACCTGATTTTTTGTGTGCAGCTTTTGCAGAACTGCTGCGTATATTAACAAATAATGCTACCATAGCTAAGGGACCATTGGCCGCCAAAGTTGTTGAACCCTTGTTTTTGTTGTTGGCAAGGCACGATTTTGCGCCCGACGGACAGCACAGTGCAATGCAGGTTTTGGTTAATATCGTAGAACATCCACAGTGTCGTGCTGAACATTCATTGACTTCTCGCAAAGCTATTGAACCACTTATCCCTTTGCTTGATTCACCGATATCAGTAGTGCAACAGTTGGCTGCTGAGCTGCTTTCACATCTGCTCCTAGAAGAACACTTTCAGAAGGATCCAGTGACACCGAAAGTAATTGCCCCTCTAATAAGAATTCTCAGTTCTGGTATACCTTTATTGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCACTGACATGGCCAAACGAAATTGCCAAAGAGGGCGGTGTTGTTGAGATTTCCAAAGTGATATTGCAAGCTGATCCTTCGCTTCCACATGCTTTATGGGAATCCGCTGCATCTGTTTTGTCAAGTATTCTGCAATTTAGCTCAGAATTCTACTTGGAAGTGCCCGTTGCTGTGTTGGTAAAGTTGCTTCGATCTGGTTCAGAGAGCACAGTTATCGGTGCGTTAAATGCGCTTCTGGTTTTGGAAAGTGATGATGGAACTAGTGCAGAATCTATGGCCGAAAGTGGTGCAATAGAGGCTCTCTTGGAGCTCCTAAGATCTCACCAGTGTGAGGACATTGCTGCACGACTCTTAGAAGTATTGCTGAACAACGTTAAGATCAGAGAAACGAAAGTCACTAAATCAGCCATCTTACCATTATCACAGTATCTCTTGGACCCACAAACCCAAGCACAGCACGCAAGGTTATTGGCAACTTTGGCTCTTGGAGATTTGTTCCAGAATGAAGCTCTTGCTCGAACAGGTGATGCGGTTTCTGCTTGTCGTGCTTTAGTGAACGTGCTTGAAGACCAACCGACAGAAGAAATGAAAGTTGTAGCTATATGTGCTTTGCAAAATCTTGTGATGTACAATCGATCAAATAGAAGAGCGGTTGCAGAGGCCGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGTAATCCTGAAACTTCTGTTCAGGCCGCAATGTTTATTAAACTTCTGTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGCGAAACTGTCAGAGCAATCACTGCCACTATTGAAAAAGATTTATGGGCGAGTGGAACTGTGAACGAAGAATATCTGAAAGCATTAAATTCTTTATTTAGCAACTTTCCACGACTTAGAGCAACCGAACCGGCAACACTTAGCATTCCCCATCTGGTAACATCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCTGCCTTGGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCTGCCGAAGTATCAAGAGCTCAGTCAATTGCTGCTGCAGATGCTATTCCCTTCTTGCAGTACTTAATCCAGTCTGGCCCGCCTCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCGGGGACGTTGGTGGTGATTGTCAAGCGTGGTAACAATATGAAACAGTCTGTTGGAGTCCCTAGTGTTTACTGCAAGATAACACTTGGCCATAATCCGCCGAGGCTCACCAAGGTTGTCTCAACTGGTCCTAATCCAGAGTGGGATGAGAGCTTTACATGGTCCTTTGAGAGTCCTCCAAAAGGCCAAAAACTTCACATTTCTTGCAAAAACAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAAATTGATCGAGTGGTAATGCTCGGAGCCGTAGCTGGCGAATACACTCTGTTGCCTGCAAGTAAAAGTGGACCCCCAAGGAATCTAGAAATTGAATTTCAATGGTCTAACAAAGCAAGTGATACAACAACGGATACAAATCAGCCTTAG 6363 0.4312 MGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGRIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWEQLRTGLKTENVVESLLTGTLKNLSSSAEGFWNSTIQSGGVDILVKLLATGQPSTLASVCFLLASVMMEDASVCSKVLSAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSSQCKEARREIASSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGAIASALMIYDNKAESTKPSDPLVVEETLLKQFKPRLPFLVLERTIEALASLYGNSVLSTKLANSDAKRLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSDLPDSKVYILDALRSMLCVAPLSDILREGSASGDAFNTVIMLLSSNKEETQAKSASALAEIFEARKDLRESSIAVRTLCSAMKLLNVESESILMESSNCMASIFLSIKENKDVAAIARDTLTPLVALANSSVLEVAEMAIGAVANLILDTEIAKKVVLEEVILPATRVLREGTNSGKTRAAAAIARLLHSQKVDNAVTDCVNRAGTVLALVSSLDSSVNESVSTSEALEALAILSRSEETGGNVKPACAILAEFPQNIIPIVLCIVNSTPSLQDKTIEILSRLCKDQPVILGDTVASASGCISSIAKRVISSSNVKVKIGGVALLICAAKPNHRRLVENINISNLSANLIQSLVDILISAQSSFGNDGDDDDKEFISICRRTQEEANSRESNTGTSIICGVDLAIWLLSILACHDERNKIAIMKAGAIDVLADKISNCYSQYSQTEYKEDSSMWICALLLAILFQDRDIIRAHSTIKSLPALATLLKSDESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGRADTDMQDLLELSEEFALVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPGRPGAPFLALGILTQLGRDCPSNKTVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSADIRKHDSAFGAVNQLIAVLRLGGRAARFSAAKALESLFSADHIRNAEIARQAIQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAAADVEMNAVDVLYRILSSNCSIDLIGDAAELCCALFGNTRIRSTTAATRCVEPLVALLATEFSPAHHSVVRALDRLVDDEQVAELIATHSAVVPLVSLLSGRNFVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDFLCAAFAELLRILTNNATIAKGPLAAKVVEPLFLLLARHDFAPDGQHSAMQVLVNIVEHPQCRAEHSLTSRKAIEPLIPLLDSPISVVQQLAAELLSHLLLEEHFQKDPVTPKVIAPLIRILSSGIPLLQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVKLLRSGSESTVIGALNALLVLESDDGTSAESMAESGAIEALLELLRSHQCEDIAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQHARLLATLALGDLFQNEALARTGDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYNRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIVKRGNNMKQSVGVPSVYCKITLGHNPPRLTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKASDTTTDTNQP* 2121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1220 2120 Coils Coil 254 274 - -
Psa7g1220 2120 Gene3D - 611 973 IPR011989 -
Psa7g1220 2120 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Psa7g1220 2120 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 2109 - -
Psa7g1220 2120 Gene3D - 364 610 IPR011989 -
Psa7g1220 2120 Gene3D - 1323 1570 IPR011989 -
Psa7g1220 2120 Gene3D - 7 362 IPR011989 -
Psa7g1220 2120 Gene3D - 1571 1777 IPR011989 -
Psa7g1220 2120 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1987 2106 IPR035892 -
Psa7g1220 2120 SUPERFAMILY ARM repeat 1144 1526 IPR016024 -
Psa7g1220 2120 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 2109 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa7g1220 2120 SUPERFAMILY ARM repeat 577 921 IPR016024 -
Psa7g1220 2120 ProSiteProfiles C2 domain profile. 1969 2086 IPR000008 -
Psa7g1220 2120 Pfam C2 domain 1988 2079 IPR000008 -
Psa7g1220 2120 Pfam Armadillo/beta-catenin-like repeat 61 91 IPR000225 GO:0005515
Psa7g1220 2120 Pfam Armadillo/beta-catenin-like repeat 482 521 IPR000225 GO:0005515
Psa7g1220 2120 SMART C2_3c 1989 2085 IPR000008 -
Psa7g1220 2120 Gene3D C2 domain 1986 2117 IPR035892 -
Psa7g1220 2120 SUPERFAMILY ARM repeat 844 1090 IPR016024 -
Psa7g1220 2120 Gene3D - 1778 1984 IPR011989 -
Psa7g1220 2120 Gene3D - 980 1322 IPR011989 -
Psa7g1220 2120 SUPERFAMILY ARM repeat 1538 1985 IPR016024 -
Psa7g1220 2120 SUPERFAMILY ARM repeat 14 645 IPR016024 -
Psa7g1220 2120 SMART arm_5 1270 1310 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 690 728 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 1439 1479 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 1356 1396 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 225 266 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 93 133 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 268 317 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 1527 1565 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 1688 1730 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 1187 1228 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 1815 1855 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 524 564 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 774 816 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 1397 1437 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 482 522 IPR000225 GO:0005515
Psa7g1220 2120 SMART arm_5 51 92 IPR000225 GO:0005515
Psa7g1220 2120 CDD C2 1990 2080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1220 Psa-Chr7 89563782 89573891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1220 445 577 U-box Gene Family AT2G23140 39.259 9.51e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1220 - - mtr:MTR_8g091470 3694.82