Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1171 ATGTATGCTTCTACTTCCTTTTCTTCACAACTCCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTTCAAGGCCCGGTTGATAATCAACCACTAGCCAACTCTCCTGTTCTCACACATAATCATAATTCAACCGATTCGTATTTCGGAATTCGTGAATTTGATGCGAATGTTGTGATGATACTTGCAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCGTTAAACTCTATTATAAGGTGTGCTTTAAGATTTTCAAACGTAGCCATCAACAACAACGGGTCTTCTTCGAGTTCGAGCAGCAATTCTTCGCCTCAATTGGTGAACAAAGGAATCAAGAAGAAGGCTCTCAAGACATTCCCAACCGTGAGTTATTCAACGGAGTTGAAATTTCCAGGTTTGGATACGGAGTGTGTGATATGTATCTCGGAATTCACAAAGGGTGAGAAGGTGCGCATTTTGCCGAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGACAGTGTCTTCTTGAGACTTGTCGAAAGATTGTTGGATCGGAAGCACCACCTATGTTGCCAGTTCCAGAAACTATTATTAGGATTCAGCCACTAGATGCTGAAGCTTTTGTACGTAACTATAGAGAAGAAAGCTGA 684 0.4196 MYASTSFSSQLLHELLVESHTRRLLFQGPVDNQPLANSPVLTHNHNSTDSYFGIREFDANVVMILAVLLCALICSLALNSIIRCALRFSNVAINNNGSSSSSSSNSSPQLVNKGIKKKALKTFPTVSYSTELKFPGLDTECVICISEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGSEAPPMLPVPETIIRIQPLDAEAFVRNYREES* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1171 227 Pfam Ring finger domain 140 183 IPR001841 -
Psa7g1171 227 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Psa7g1171 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Psa7g1171 227 SMART ring_2 141 182 IPR001841 -
Psa7g1171 227 CDD RING-H2_PA-TM-RING 140 183 - -
Psa7g1171 227 SUPERFAMILY RING/U-box 119 188 - -
Psa7g1171 227 PANTHER RING-H2 FINGER PROTEIN ATL78 1 226 IPR044602 GO:0016567|GO:0016740
Psa7g1171 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1171 Psa-Chr7 87427984 87429304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1171 23 187 C3H Transcription Factor Family AT3G10910 47.305 2.57e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1171 K19040 - gmx:100780127 309.686