Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1133 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACGGCGGAGGAGCTGCAGGAAGACAAAGATTCTTCCAGAAAGAAGAAAATTGACACCGCCGACATTAAATCCGAGAGGACTTACCGGAAGCGCGACGTTGACGACGATCTGAACGGCGAAGATAGGCGGAGCAAAAGGTCTCGTGGCGAAGACGAGAATGGCTCTAAAAAAGACCGCGATAGAGACAGAGACAGAGAGAAAGATCGTGACCGTGAACGATCTTCCGGCCGCCATAAGGAGAGGGATAGGGAGAGGGATAGGGACGGAGAGAAAGGTAGTAGAGAGAAAGAGAGGGAGAGGGACGGAGAGAAAGGTAGTAGAGACAGAGATAGAGAGAAGGATAAGGATAGGGATAGAGAGAGGGAAAAGGAGAGGGAGAGGAGGGATAAAGAAAGGGAAAAGGAACGGGAAAGAAGAGAGAGGGAGAGAGAGAAGGAACGGGAGAGAGAAAAGGAGGAGAAAGAGAGACCTAGGAGGAGTATGAGTCGTCCTGAGAGAGATAGAGGAGAAAGAGTAGACAGAGAGCGAGATTTCGAAAATAGAGATGGCAGGAGATTCAGGGATAAGAAAGATAACGTGGAACCTGAAGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCTTTAAAAGCAACCGAGAGAGATGTATATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTAATCATGGATCGGAACTCAAGACGATCTAAAGGAGTCGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTATCTCCGGCCAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAAAATCTTGTTCAGTCTAATGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCATTTCAACATGACCGAGGCTAATCTCCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAACTACCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAGTTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCCGCAGACTTTGATGACGATGAAGGTGGATTGACTTTAAATGCCCACTCAAGAGCACTGCTTATGCAAAGGTTGGCTGGTGCTGACATTCCCACAAGCATTGGTGTGCCAATTGTGAATGGGTCAGTTCCTGTTCAGCAGGCTTTTAGCATGCCTATTGGTAATCCAGGTGTTATACCTGCCTCCGGTCTACCAACACAAGTTATGCCTACCCCTGTGGTAGAACCAGTAGGAATCCCCAGCGAGTGTTTATTATTGAAGAATATGTTTGATCCAAGCACCGAGACTGAACCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCGAAGTATGGCCGAGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTACTTGCAGTTTGACACAGTGGAAGCATCAAGTGCTGCGCAACGGGCAATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTATCTTCATGGAACCACATTTATATGAAGCTAAGTTTAACGGGGAATCTTGA 1746 0.4576 MDFDEYDYLEKTAEELQEDKDSSRKKKIDTADIKSERTYRKRDVDDDLNGEDRRSKRSRGEDENGSKKDRDRDRDREKDRDRERSSGRHKERDRERDRDGEKGSREKERERDGEKGSRDRDREKDKDRDREREKERERRDKEREKERERREREREKEREREKEEKERPRRSMSRPERDRGERVDRERDFENRDGRRFRDKKDNVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIAISGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADIPTSIGVPIVNGSVPVQQAFSMPIGNPGVIPASGLPTQVMPTPVVEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFDTVEASSAAQRAMHMRWFARRLITAIFMEPHLYEAKFNGES* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1133 581 Gene3D - 208 302 IPR012677 -
Psa7g1133 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 395 IPR000504 GO:0003723
Psa7g1133 581 Gene3D - 313 409 IPR012677 -
Psa7g1133 581 SUPERFAMILY RNA-binding domain, RBD 317 568 IPR035979 GO:0003676
Psa7g1133 581 PANTHER CC1-LIKE SPLICING FACTOR 1 581 - -
Psa7g1133 581 CDD RRM3_RBM39_like 486 568 - -
Psa7g1133 581 Coils Coil 124 167 - -
Psa7g1133 581 SMART rrm1_1 318 391 IPR000504 GO:0003723
Psa7g1133 581 SMART rrm1_1 488 565 IPR000504 GO:0003723
Psa7g1133 581 SMART rrm1_1 216 288 IPR000504 GO:0003723
Psa7g1133 581 MobiDBLite consensus disorder prediction 14 214 - -
Psa7g1133 581 CDD RRM2_RBM23_RBM39 319 391 - -
Psa7g1133 581 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 581 - -
Psa7g1133 581 SUPERFAMILY RNA-binding domain, RBD 207 300 IPR035979 GO:0003676
Psa7g1133 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Psa7g1133 581 CDD RRM1_RBM39_like 216 288 - -
Psa7g1133 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 563 IPR000504 GO:0003723
Psa7g1133 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 283 IPR000504 GO:0003723
Psa7g1133 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 389 IPR000504 GO:0003723
Psa7g1133 581 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 410 505 IPR029123 -
Psa7g1133 581 TIGRFAM SF-CC1: splicing factor, CC1-like family 104 577 IPR006509 GO:0003723|GO:0005634|GO:0006397
Psa7g1133 581 Gene3D - 482 580 IPR012677 -
Psa7g1133 581 Coils Coil 6 26 - -
Psa7g1133 581 MobiDBLite consensus disorder prediction 14 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1133 Psa-Chr7 85056378 85062546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1133 289 390 Eukaryotic Initiation Factors Gene Family AT4G34110 31.068 2.57e-06 48.5