Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g1111 | ATGTATGCTTCTACTTCTTTTACTTTACCACTCCTCCATGAACTACTTGTTGAATCTCACACAAGAAGGTTACTCTTCCAAAGTCCAATTGATCATCAATCACTTAAAATCAACTCTTATGTTTTCACAAACAACCACAATTCAACAAACTCGTATTTTGGTGCTCATGGATTTGATTCAAATGTTGTGAAAATAATGGCGGTCCTATTATGTGCTCTTATTTGTTCACTTGTATTAAACTCCATCATAAGGTGTGCCTTGAGATTTTCAAACGCGGCGATCACCAACAACGAGTCTTCTTCGAGTTTGAGCAGCGATCTTTCACCTCAATTAGCTAACAAAGGAATCACGAAGAAAACTCTCGAGAAATATCCAACAATGACTTATTCGGCTGAGTTGAAACTATCAGATTTGGATACAGAGTGTGCGATATGTCTTTCAGAGTTTACAAATGGTGAAAAAGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTTCTTTGCATTGACAAATGGTTAAAGGAACACTCATCATGTCCCAAGTGTAGACAATGTCTTCTTGAAACATGTCGAAAGATTGGTGGGTCACAAGTGCAACCAATTGTGTTGCCGGTGCTAGAAACCATTATAAGGATCTAA | 642 | 0.3785 | MYASTSFTLPLLHELLVESHTRRLLFQSPIDHQSLKINSYVFTNNHNSTNSYFGAHGFDSNVVKIMAVLLCALICSLVLNSIIRCALRFSNAAITNNESSSSLSSDLSPQLANKGITKKTLEKYPTMTYSAELKLSDLDTECAICLSEFTNGEKVRILPKCNHGFHVLCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPIVLPVLETIIRI* | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g1111 | 213 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 188 | IPR013083 | - | |
| Psa7g1111 | 213 | SMART | ring_2 | 142 | 183 | IPR001841 | - | |
| Psa7g1111 | 213 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 213 | - | - | |
| Psa7g1111 | 213 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 184 | IPR001841 | - | |
| Psa7g1111 | 213 | Pfam | Ring finger domain | 141 | 184 | IPR001841 | - | |
| Psa7g1111 | 213 | CDD | RING-H2_PA-TM-RING | 141 | 184 | - | - | |
| Psa7g1111 | 213 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 213 | IPR044602 | GO:0016567|GO:0016740 | |
| Psa7g1111 | 213 | SUPERFAMILY | RING/U-box | 120 | 189 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g1111 | Psa-Chr7 | 83170780 | 83171759 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g1111 | 58 | 188 | C3H Transcription Factor Family | AT3G10910 | 49.624 | 8.17e-40 | 133 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g1111 | K19040 | - | gmx:100780127 | 276.174 |