Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g1110 | ATGTATGCTTCTACTTCTTTTACTTCACAACATGTCCATGAGCTTCTTGTAGAATCTCACTCAAGAAGGTTACTCTTCCACAATCCTATTGATCACCAATCACTTAAAATCAACTCTCATTTCTTCATAAACAACGACAATTCAACGGACCAAACTTTAGGAGGTCGTGAATTTGATTCAAATGTTGTGATGATAATTGCAGTTCTCTTATGTGTGTTCATTTGCTTACTTGCATTAAACTCTATCATAAGGTGTGCGTGCGCCTTAAGGATTTCGAACGTAGCCATCAACAGCAACGAGTCTTCTTCGAGTTCGAGTAGCAGCTCTTCACCTCAATTGGCCAACAAAGGAATCAAGAAGAAAGCTCTTAAGAAATTCCCGAAAGTGACTTATTCAACTGAGTTGAAATTGAAACTACCAGGTTTGGATACGGAGTGTGTGATATGTCTCTCGGAGTTTAGAAATGGTGAAAAAGTGCGCGTTTTGCCTAAATGCAACCATGGTTTTCATGTATGTTGTATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAGTGTCTTCTTGAAACTTGTCAAAAGATTGGTCGGTCGCAGGTGCAGCCAATTGTGTTGCCAGTGCTAGAAACCATTATACAGATCCAACTACTAGAACCTGAAGCTTTGGAGTGTAACTCTAGAGAAATATGA | 699 | 0.3948 | MYASTSFTSQHVHELLVESHSRRLLFHNPIDHQSLKINSHFFINNDNSTDQTLGGREFDSNVVMIIAVLLCVFICLLALNSIIRCACALRISNVAINSNESSSSSSSSSSPQLANKGIKKKALKKFPKVTYSTELKLKLPGLDTECVICLSEFRNGEKVRVLPKCNHGFHVCCIDKWLKEHSSCPKCRQCLLETCQKIGRSQVQPIVLPVLETIIQIQLLEPEALECNSREI* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g1110 | 232 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 232 | IPR044602 | GO:0016567|GO:0016740 | |
| Psa7g1110 | 232 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 232 | - | - | |
| Psa7g1110 | 232 | SMART | ring_2 | 146 | 187 | IPR001841 | - | |
| Psa7g1110 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 192 | IPR013083 | - | |
| Psa7g1110 | 232 | Pfam | Ring finger domain | 145 | 188 | IPR001841 | - | |
| Psa7g1110 | 232 | SUPERFAMILY | RING/U-box | 127 | 194 | - | - | |
| Psa7g1110 | 232 | CDD | RING-H2_PA-TM-RING | 145 | 188 | - | - | |
| Psa7g1110 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 146 | 188 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g1110 | Psa-Chr7 | 83158573 | 83161137 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g1110 | 58 | 192 | C3H Transcription Factor Family | AT3G10910 | 50.000 | 6.08e-39 | 131 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g1110 | K19040 | - | gmx:100780127 | 275.404 |