Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1109 ATGTATGCTTCAACTTCCCTCACTTCACAGTATGAGCTTCTTGTGAAATCCAACACTAGAAGGTTACTCTTCCAAGGCCCAATTGATAATCAACCACTAAACAACCACACTTCAACCGACTCCTCGTATTTTGGAGTTCGTGAATTTGATTCTAACGTTGTGATGATACTTGCAGTGTTATTGTGTGCTCTTATTACCTCACTTGCATTAAACTCCATCATAAGATGTGCCTTAAAACTTTCTAACGAAGCCATCAACAACAACCAAGCTTCACAACAGTTGGCTAATAAAGGAATCAAGAAGAAAGCTCTCAAAAAGTTCCCCACATTGAACTATTCAACCGAGATGAAACTACCTGGTTTGGACACAGAGTGTGTCATATGTCTCTCCGAGTTTGCCAAGGGTGAAAAGCTACGGATTTTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACATTCATCTTGTCCCAAGTGCAGACACTGTCTTCTTCAAACATGTCCAAAGGTTGGTGAGTCACAGGTGCAACCAATTGTGCTGCCAGTGCCGGAAATCACTGTACGGATTCAACCACTAGACCATGAAGCTGTTGAACGTAACTATAGGGAAGAAAGAAGATAA 642 0.4128 MYASTSLTSQYELLVKSNTRRLLFQGPIDNQPLNNHTSTDSSYFGVREFDSNVVMILAVLLCALITSLALNSIIRCALKLSNEAINNNQASQQLANKGIKKKALKKFPTLNYSTEMKLPGLDTECVICLSEFAKGEKLRILPKCNHGFHVRCIDKWLKEHSSCPKCRHCLLQTCPKVGESQVQPIVLPVPEITVRIQPLDHEAVERNYREERR* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1109 213 Pfam Ring finger domain 124 167 IPR001841 -
Psa7g1109 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 171 IPR013083 -
Psa7g1109 213 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Psa7g1109 213 SUPERFAMILY RING/U-box 103 173 - -
Psa7g1109 213 CDD RING-H2_PA-TM-RING 124 167 - -
Psa7g1109 213 PANTHER RING-H2 FINGER PROTEIN ATL78 1 211 IPR044602 GO:0016567|GO:0016740
Psa7g1109 213 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 211 - -
Psa7g1109 213 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1109 Psa-Chr7 82899133 82900377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1109 21 171 C3H Transcription Factor Family AT3G10910 45.783 9.50e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1109 K19040 - gmx:100780127 277.33