Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1108 ATGTATGCTTCTATTTCCTTTACTTCACAACTGGTCCATGAGCTTCTTGTTGATTCTCACACAAGAAGGCTACTTTTCCAAAACCAAGCTGATCATAAATCACTAACCAACTCATCTGTTTTAACAAACAACAATAATTCAACAGATTCATATTTTGGAGTTCGTGAATTTGATTCTGATGTTGTGATGATACTTGCAGTGTTATTGTGTGCTTTTATTTCCTCACTTGCATTAAACTCCATCATAAGATGTGCCTTGAGGTTTTCAAATATAGCAATCAACAACAACCAAGCTTCACAACAATTGGCTAATAAAGGAATCAAGAAGAAAGCTCTCAAAACATTCCCCACAGTGAACTATTCAACCGAGTTGAAACTACCTAATTTGGACACAGAGTGTATGATATGTCTCTCAGAGTTCGCAAAAGGTGAAAAGGTACGCATATTGCCTAAATGCAACCATGGCTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAATGTCTTCATCAAACATATCGAAAGGTTGGTGAGTCGCAGGTGCAACCAATTGTGCTCCCTGTGCCGGAAATCACTATAAGGATTCAACCACTAGACCATGAAGCAGTTGAACGTAACTATAGGGTGGAAAGAAGATAA 666 0.3829 MYASISFTSQLVHELLVDSHTRRLLFQNQADHKSLTNSSVLTNNNNSTDSYFGVREFDSDVVMILAVLLCAFISSLALNSIIRCALRFSNIAINNNQASQQLANKGIKKKALKTFPTVNYSTELKLPNLDTECMICLSEFAKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLHQTYRKVGESQVQPIVLPVPEITIRIQPLDHEAVERNYRVERR* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1108 221 CDD RING-H2_PA-TM-RING 132 175 - -
Psa7g1108 221 Pfam Ring finger domain 132 175 IPR001841 -
Psa7g1108 221 PANTHER RING-H2 FINGER PROTEIN ATL78 1 218 IPR044602 GO:0016567|GO:0016740
Psa7g1108 221 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Psa7g1108 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 181 IPR013083 -
Psa7g1108 221 SMART ring_2 133 174 IPR001841 -
Psa7g1108 221 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 218 - -
Psa7g1108 221 SUPERFAMILY RING/U-box 111 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1108 Psa-Chr7 82799067 82800205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1108 23 178 C3H Transcription Factor Family AT3G10910 45.783 9.36e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1108 K19040 - gmx:100780127 278.87