Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1105 ATGTATGCTTCTACTTCCTTTACTTCACCACTCTTCCATGAGCTTCTTGTAGAATCTCACACAAGAAGGTTACTCTTCCAAAGCCCTCTTGATCATCAATCACTAACAAACTCTCCTGTTTTAACAAACAACAATAATTCAACAGACTCACATTTTGGAGCTCTTGAATTTGATTCAAATGTTGTGATGATAGTTGCAGTTCTATTGTGTGCGCTTATATGTTCACTTGTATTAAACTCCATTATAAGGTGTGCCTTGAGGTTTTCAAACAACAGCTCTTCTTCGAGTTCGAGCAGCAACTCTTCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAGGCTCTCAAGACATTTCCCATTGTGAGCTACTCAGATGAGTTGAAACTACCAGGTTTGGATGCTGAGTGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAGGTACGCGTTTTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACGAATGGCTAAAGGAACACTCATCATGTCCTAAGTGCAGACAATGTCTTCTTGAAACATGTCGAAAGATCGGGGAGTCGCAGGTGCAACCAATTGTGCTGCCAGTGCCAGAAATCATTATAAGGATTCAACCACTAGACCATGAAGCTGTTGAACGTAACTATAGGGAAGAAAGCAGATAA 675 0.4044 MYASTSFTSPLFHELLVESHTRRLLFQSPLDHQSLTNSPVLTNNNNSTDSHFGALEFDSNVVMIVAVLLCALICSLVLNSIIRCALRFSNNSSSSSSSSNSSPQLVNKGIKKKALKTFPIVSYSDELKLPGLDAECMICLSEFTKGEKVRVLPKCNHGFHVRCIDEWLKEHSSCPKCRQCLLETCRKIGESQVQPIVLPVPEIIIRIQPLDHEAVERNYREESR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1105 224 SUPERFAMILY RING/U-box 114 184 - -
Psa7g1105 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 182 IPR013083 -
Psa7g1105 224 Pfam Ring finger domain 135 178 IPR001841 -
Psa7g1105 224 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Psa7g1105 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 222 - -
Psa7g1105 224 PANTHER RING-H2 FINGER PROTEIN ATL78 1 222 IPR044602 GO:0016567|GO:0016740
Psa7g1105 224 CDD RING-H2_PA-TM-RING 135 178 - -
Psa7g1105 224 SMART ring_2 136 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1105 Psa-Chr7 82703716 82704607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1105 36 182 C3H Transcription Factor Family AT3G10910 48.701 7.67e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1105 K19040 - gmx:100780127 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1105 7 82703716 82704607 Psa5g1483 5 113857005 113858447 PCT