Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1089 ATGTATGCTTCTACTTCCTTTACTTCACAACATGTCCATGAGTTTCTTGTAGAGTCTCACTCAAGAAGGTTACTCTTCCAAAATCCTATTATTCATCAATCACTTAAAATCAACTCTCCTGTTTTAGCAAATATCAACAATTCAACCGACTCGTATTTCGGAAGTACCAAATTTGATTCAAATGTTGTGATGATAATTGCAGTCATATTATGTGTGTTTATTTTTTCACTTGCATTAAACTCCATCATAAGGTGTGCGTGCGCCTTAAGGATTTCAAACGTATCCATCGACAACATATCTTCTTTGAGTAGCAATTCTTCACCTCAATCGGCTAAAAAAGGAATCAAGAAGAAAGCTCTTAAGAAATTCCCAAAAGTGATTTATTCAACTGAGTTGAAACTACCAGGTTTGGATAGTGAGTGTGTGATATGTCTATCAGAGTTCATAAATGGTGAAAAGGTGCGTATTTTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGTTAAAGGAACACTCATCATGTCCCAAGTGTAGACAATGCCTTCTTGAAACTTGTCCAAAGATTGGTGGGTCGCAGGTGCAACCAATTGTGTTGCCTGTGCCAGAAATTATTATACAGATACAACCACTAGAACCTGAAATTTTGGAGCGTAACTATAGAGAAATAGTATAA 687 0.3639 MYASTSFTSQHVHEFLVESHSRRLLFQNPIIHQSLKINSPVLANINNSTDSYFGSTKFDSNVVMIIAVILCVFIFSLALNSIIRCACALRISNVSIDNISSLSSNSSPQSAKKGIKKKALKKFPKVIYSTELKLPGLDSECVICLSEFINGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCPKIGGSQVQPIVLPVPEIIIQIQPLEPEILERNYREIV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1089 228 PANTHER RING-H2 FINGER PROTEIN ATL78 1 227 IPR044602 GO:0016567|GO:0016740
Psa7g1089 228 CDD RING-H2_PA-TM-RING 140 183 - -
Psa7g1089 228 Pfam Ring finger domain 140 183 IPR001841 -
Psa7g1089 228 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Psa7g1089 228 SMART ring_2 141 182 IPR001841 -
Psa7g1089 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Psa7g1089 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 227 - -
Psa7g1089 228 SUPERFAMILY RING/U-box 119 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1089 Psa-Chr7 81175284 81176279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1089 36 187 C3H Transcription Factor Family AT3G10910 46.497 6.04e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1089 K19040 - gmx:100527126 268.085