Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1083 ATGCATGCTTTTACTTCCTTTACTTCACCACTCCTCCATGAGCTTTTCGTGGAATCCCACACAAGAAGGTTACTTTTCCAAGGCCCTATTGATCATCAATCATTAACAACCTCCCATGTTCTCACACACAACACTTCAACAAACTTATATTTTGGTCTTAGCGAAACTGATACAAATGTTGTAATGATACTTGCAGTTCTATTCTGTGCTCTTATTTGCTCACTTGTATTAAACTCCATCATAAGGTGTGCTTTAAGGTTTTCAAACATGGCCATCAACAATAACGCTTCTTCGAGTTCGAGCAGCAACTCTTCACCTCAATCGGTCAACAAAGGAATCAAAAAGAAGGCTCTCAAAACATTCCCAACAATGAGTTATTCAACTGAACTGAAATTACCTAGTTTAGATACGGAGTGTGTCATATGTATCTCAGAGTTTACTAAGGGTGAAAAGGTACGCATTTTGCCAAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGTTAAAGGAACACTCATCATGTCCCAAGTGCAGACAATGCCTCCTTGAAATATGTCGAAAGGTTGGTGAGTCGCAGGTGCAACCAATTGTGCTGCCAGTGCCAGAAATCATTATAAGGGTTCAACCACTAGACCATGAAGCTGTTGAACGTAACTATAGGGAAGAAAGAAGATAA 684 0.3962 MHAFTSFTSPLLHELFVESHTRRLLFQGPIDHQSLTTSHVLTHNTSTNLYFGLSETDTNVVMILAVLFCALICSLVLNSIIRCALRFSNMAINNNASSSSSSNSSPQSVNKGIKKKALKTFPTMSYSTELKLPSLDTECVICISEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLEICRKVGESQVQPIVLPVPEIIIRVQPLDHEAVERNYREERR* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1083 227 SUPERFAMILY RING/U-box 117 187 - -
Psa7g1083 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Psa7g1083 227 Pfam Ring finger domain 138 181 IPR001841 -
Psa7g1083 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 185 IPR013083 -
Psa7g1083 227 CDD RING-H2_PA-TM-RING 138 181 - -
Psa7g1083 227 PANTHER RING-H2 FINGER PROTEIN ATL78 1 225 IPR044602 GO:0016567|GO:0016740
Psa7g1083 227 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Psa7g1083 227 SMART ring_2 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1083 Psa-Chr7 80100473 80101562 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1083 52 185 C3H Transcription Factor Family AT3G10910 50.360 4.56e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1083 K19040 - gmx:100780127 276.559