Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1081 ATGTATGCTTCTACTTCCTTTACTTCACCACTCCTCCATGAACTTCTTGTAGAATCTCACACAAGAAGATTACTCTTCCAAAACCCTGTTGATCATCAATCACTAATAAACTCTCCTGTTTTAACGAACAACAATAATTCAATAGACTCGCATTTCGGAGTTCGTCAATTTGATTCAAATGTCGTAATGATACTTGCAATCCTATTATCCATACACAACAATGAAACTTCTTCGAATTTGAGTAGCAACCCTTCACCTCAATCGGCCAACAAGGGAATCAAGAAGAAAGCTCTCAGAACATTCCCAACAATGAGTTATTCAACGGAGTTGAAATTATCAAGTTTGGATACGGAGTGTGTGATTTGTATCTCAGAATTCACAAAAGGTGAAAAGGTGCGCGTATTACCTAAATGCAACCATGGGTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAATGCCTTCTTGAAACTTGTCCAAAGATTGGTGGGTCGCAAGTGCAACCAATTGTGTTGCCAGTACCAGAAATTATTATACAGATACAACCACTAAACCATGAAGCTGTTGAACGTAACTATAGGGAAGAAAACAGATAA 624 0.383 MYASTSFTSPLLHELLVESHTRRLLFQNPVDHQSLINSPVLTNNNNSIDSHFGVRQFDSNVVMILAILLSIHNNETSSNLSSNPSPQSANKGIKKKALRTFPTMSYSTELKLSSLDTECVICISEFTKGEKVRVLPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCPKIGGSQVQPIVLPVPEIIIQIQPLNHEAVERNYREENR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1081 207 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 70 - -
Psa7g1081 207 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 71 205 - -
Psa7g1081 207 PANTHER RING-H2 FINGER PROTEIN ATL78 1 70 IPR044602 GO:0016567|GO:0016740
Psa7g1081 207 PANTHER RING-H2 FINGER PROTEIN ATL78 71 205 IPR044602 GO:0016567|GO:0016740
Psa7g1081 207 CDD RING-H2_PA-TM-RING 118 161 - -
Psa7g1081 207 Pfam Ring finger domain 118 161 IPR001841 -
Psa7g1081 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 165 IPR013083 -
Psa7g1081 207 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Psa7g1081 207 SUPERFAMILY RING/U-box 98 167 - -
Psa7g1081 207 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1081 Psa-Chr7 80051032 80051721 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1081 23 165 C3H Transcription Factor Family AT1G20823 37.580 7.63e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1081 K19040 - gmx:100780127 257.684