Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1073 ATGGTGAGAGACGATTTATACATCACGGTTCCGAGTTTATTCCGGTGTCCTATATCGCTTGACGTGATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACTTACGACCGTTCAAGCATCCAACGCTGGCTGGATAACGGTAACAATACTTGTCCGGCCACTATGCAGATTCTTCAAACAAAGGATTTCATACCTAACCGCACCTTACAGAGGCTCATCCAGATCTGGTCCGATTCAGTCCGCGACCGAGTCGACTCGCCCGATTCTCATCTTTCCGGCGACTCGTTTGATAAACGTGATCAGCTACTTGTTGCTTTGACCGATTTGGAGTCCGGTAGCGAGAACCGGTTCGAGTCACTTGAGAAAATCGTACGGTTCGCTAAAGATTCCGAAGAGAATAGTGTTTTTCTGGCTAAAACGGAAGGCTTCGTGGCGTTGTTGGTAGGTTTTCTTGATAATGTTGACGGTGGAGTGGAACGGAGTGTGGAATTGCTTGAACAGGTTGTTATTGCGTTGGATTTGGTTCTGAGTAAAATAGAGAATCGCGAGTCGATTCTGAAGAACCAGAAGGAGAGGGAAGGAGAGAGTGTAGATTCTTTGCTTCTTGTTTTGAAACAAGGAAGCTGTGAATCGAAGATTGCATCGGTTAGGGTTTTGAAATCAATAGCCGATGACAATGAATCGAAGCTTCTTATAGCGGAGAAAGAAGGTTTATTATCTCAATTGCTCAATCTAATCACGCCGGAGAAAGATGTAAACCTAATCGAGAACTCACTCTCGTGTCTGGTGGCAATTTCGACGCCGAAGCGGAACAAAGCTAAATTGATTCATCACGGAGCAGTGAAAGTATTCTCGAACCTTCTACCATCGAACTTGAGCGTTTCGGGGACGGAGAACGTGTTGAAACTACTTGAAACGGTGTCATCGACGAAGGAAGGGAGGTCGGAGATATGCGAAGCGCCGTCGTGCGTGGCGGCGATAGCAAACAAAGTATTAAAAGTTTCCACCGTGGCGACGGAGCACGCGGTTACGATATTATGGAGTGTTTGTTATTTGTTTCGTGATCAGAAAGCGCAAGAAGCAGTTACGAAAGCTAACGGATTGACGAAGATTTTACTTCTGATGCAGAGTAATTGCACGCCACATGTTCGTCAAATGTCTGTGGATTTGCTTAAGATATTTCGTGTTAATTCTAAGTCGTGTCTTTCTTCGTATGACACTAAAACGACTCATATTATGCCATTTTGA 1248 0.4511 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFIPNRTLQRLIQIWSDSVRDRVDSPDSHLSGDSFDKRDQLLVALTDLESGSENRFESLEKIVRFAKDSEENSVFLAKTEGFVALLVGFLDNVDGGVERSVELLEQVVIALDLVLSKIENRESILKNQKEREGESVDSLLLVLKQGSCESKIASVRVLKSIADDNESKLLIAEKEGLLSQLLNLITPEKDVNLIENSLSCLVAISTPKRNKAKLIHHGAVKVFSNLLPSNLSVSGTENVLKLLETVSSTKEGRSEICEAPSCVAAIANKVLKVSTVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPHVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1073 415 PANTHER WDSAM1 PROTEIN 4 415 IPR045185 GO:0061630
Psa7g1073 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Psa7g1073 415 CDD RING-Ubox_PUB 14 56 IPR045210 -
Psa7g1073 415 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 415 - -
Psa7g1073 415 SUPERFAMILY ARM repeat 195 401 IPR016024 -
Psa7g1073 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Psa7g1073 415 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Psa7g1073 415 Gene3D - 91 406 IPR011989 -
Psa7g1073 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Psa7g1073 415 SUPERFAMILY RING/U-box 5 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1073 Psa-Chr7 79787218 79789474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1073 1 415 U-box Gene Family AT5G64660 54.801 3.95e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1073 - - cam:101496984 667.922