Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1065 ATGTTCATGGAAAATAACCTAAATAATTCTAGTAGTGCATTCACAAGCACTTGGAATCTTGAGAAAATGGAAGCAAATGAACAAAACCATATTATTCTACAACAAGATCATCATCATCATCATCATGAACAACATCAAATTCCTATGAGTAATTCTTCTGGGATTTGGCCAGCAAATAACTACAACAACATGATGATGGCAGCACCACCACCACCACCACCATCTTCATCAGGTTCACTCAGTGACATATTAGGGATCCACCAAATCGAAGAGGTTGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCTGCTATGCAACCGGTGGAAATCGATCCGGCAACAATCCGTAAACCAAAGCGGAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCTGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTGAAGTTCTTGAAGAAACAAATTAGGTTGCTTCAATCTACTCCTCAAAATCAACAATATCAATTACCACTCTCATCACAATGCATTAATTCTACTCCTCCTCCTAATGCTTTGTTGTTATCTCCTTCTTGTGACATCGTCTGGCCTTTTGCACCAAATCTACTACTCACTTCCACAGCGGCCGCATCGATCGACTTGCCATCCGGAATACAGTTTAACGCCGGAGAACATTCTCATCCGCATCCGCATCCACATTCACATTCACATATCCATGCTTGTGATGGCTCGTCAAGCTTTAACCATCATGAGGTAATTAGTGAGTAA 855 0.4082 MFMENNLNNSSSAFTSTWNLEKMEANEQNHIILQQDHHHHHHEQHQIPMSNSSGIWPANNYNNMMMAAPPPPPPSSSGSLSDILGIHQIEEVEEQEEELGAMKEMMYKIAAMQPVEIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKKQIRLLQSTPQNQQYQLPLSSQCINSTPPPNALLLSPSCDIVWPFAPNLLLTSTAAASIDLPSGIQFNAGEHSHPHPHPHSHSHIHACDGSSSFNHHEVISE* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1065 284 Pfam Helix-loop-helix DNA-binding domain 142 181 IPR011598 GO:0046983
Psa7g1065 284 CDD bHLH_AtIND_like 133 190 - -
Psa7g1065 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Psa7g1065 284 Gene3D - 135 204 IPR036638 GO:0046983
Psa7g1065 284 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 260 - -
Psa7g1065 284 SMART finulus 138 187 IPR011598 GO:0046983
Psa7g1065 284 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 260 IPR045843 GO:0003700|GO:0006355
Psa7g1065 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1065 Psa-Chr7 79380879 79382807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1065 101 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 80.899 1.24e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g1065 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1065 - - aprc:113856609 308.531