Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1048 ATGGCTATACCAAAATTGATTCCTGGGTTTCGATTCCATCCTACTGGAGTTGAATTGATTAAGTACTTTTTGAAAAGGAAAGTGATGGGGAAAAAATTTCATACTGATGTCATTGCTGAACTTGACATATACAAATATGCACCTTGGGATCTCCCAGATATGTCTTATCTGAAAAATGGGGATTTGGAATGGTACTTCTTCTGCCCGATTGGGAAGAAGTATGGAAGTGGGGCGAGGTTGAATCGAGCTACTGAAATTGGGTTTTGGAAAGCTACTGGTAAGGATAGAGCTGTTCAACACAATAATCATACGGTGGGGATGATAAAAACCTTGGTGTTTCACACTGGAAAAGCACCCCGTGGTGATCGAACGGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTATCTGACAAAGGGATTGTTCAGGATTCATATGTAATCTGTAGGGTATTTCAAAAGGAAGGTCCTGGTCCCAAGAATGGTGCGCAATATGGGAGACCATTTATTGAAGAAGATTGGAGTGACGATGAAGTGGGAATACCTTTTGTAGAATCGAATGGGCTTGTTCCCAGTTTGCCTGTGACACCTGTTAGTTATGTTATGAATGACCGGAATCTTCAAGCTAGTAGATGTAGTGGTTCAATATCCATGCCATGTCAATCAGGATTGATGCCTTCTCCCATTCCTGTGAATTCATGTCAAACAGGATTGGTTCCTTCTCCCGATCCTGCGAGTTCATGTCAAACTGGATCGATGCCTACTCCCGATCCAGTGAATTCGTGTCAAACTGGATCGATGCCTACTCCCGATCCCGTGAATTCGTGTCAAACTGGATCGATGCCTACTCCCGATCCCATGAATTCATGTCAAATTGGATCTATGCCTACTCCCGATCCCATGAATTCGTGTCAAACTGGATCGATGCCTACTCCCGATCCTGTGAATTCGTGCCAAACTGGATCGATGCCTACTCCCGATCCTGTGAATTCGTGTCAAACTGGATTGACGCCTTCTTTTGACCCCGCAACTCATCCATATCCAGACAATCAAGCTATTAGTAATGATGATGATATTTTATCAATGCTTGATATTTTCAAAGACTACAACACATTTCCTGAGGAAAATATTGCTGAAGGTGCACCTATGAGTGACTTTTTTGAGGGTTTGGGAGACCTGGATTGCTGGGCCGCATTTGGATCCTTTTACCAGAATGCTGACTTTAGCACAGACGGAATGAGCTTGATAGATCTAGACTCTGAGTTGTTCTGGCAGAGTACTACCCAACCTGAAAGGTGGAGTTCAAATAAGTAA 1320 0.4318 MAIPKLIPGFRFHPTGVELIKYFLKRKVMGKKFHTDVIAELDIYKYAPWDLPDMSYLKNGDLEWYFFCPIGKKYGSGARLNRATEIGFWKATGKDRAVQHNNHTVGMIKTLVFHTGKAPRGDRTDWVMHEYRLEDKDLSDKGIVQDSYVICRVFQKEGPGPKNGAQYGRPFIEEDWSDDEVGIPFVESNGLVPSLPVTPVSYVMNDRNLQASRCSGSISMPCQSGLMPSPIPVNSCQTGLVPSPDPASSCQTGSMPTPDPVNSCQTGSMPTPDPVNSCQTGSMPTPDPMNSCQIGSMPTPDPMNSCQTGSMPTPDPVNSCQTGSMPTPDPVNSCQTGLTPSFDPATHPYPDNQAISNDDDILSMLDIFKDYNTFPEENIAEGAPMSDFFEGLGDLDCWAAFGSFYQNADFSTDGMSLIDLDSELFWQSTTQPERWSSNK* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1048 439 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Psa7g1048 439 PANTHER PLANT NAC DOMAIN PROTEIN 352 416 - -
Psa7g1048 439 PANTHER PLANT NAC DOMAIN PROTEIN 1 243 - -
Psa7g1048 439 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Psa7g1048 439 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Psa7g1048 439 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Psa7g1048 439 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 243 - -
Psa7g1048 439 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 352 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1048 Psa-Chr7 78235029 78237632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1048 1 263 NAC Transcription Factor Family AT5G09330 51.685 2.60e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa7g1048 NAM 9.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1048 - - mtr:MTR_8g093580 677.552