Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1042 ATGGCGAACAAGAGCGTAAAAAAACCTCAGAGTCTCAACGATAGCCACTATCGCTTCCTTCAGGATTTCTCTGCTCCTCCAAAACCTTCTTCCCACCCTCTCAACAATGATCAATACGATACTCCGATTCAACCTCGAAGCCTCATGTATCATGACGATGATACGATTCCGCAGTTTTCTGCTATCACCGACTTCGATTCTCCAATCGAAGAAGCTCATCTACCTAACCAGGTTCCGCAGTTTTTCGATGATCGTTCTCTTAGTCAAAATTATTCCGAGAATCGCCAACAAGCTGAGGTAGAGGAAGCTCCTATTCCTAACAAGGTTCCTCAGTTTTTAGATAGTTTTTCTCTCGGTCAACATTATGCGGAGAAACACCGGCCAGTTAATGTAGAAGAAGCTCTTTTTCCAAAAGAGGTTCCACAGGGTTTGAATAATTATTCTCTCAGTCAAAATCATCCGGAGAAACACCAAGCAGTTAATGCCGAAGAAACTACTCTTCGTCCAAAGGAGGTTCTGCAGGGTTTGGATGGTTATACTCCTAGTCAAAATCATCCGGAGAAACGCCAACCAGTTAGTGCAGAAGAAACTACTCTTCCAAAGGAGTTTCCACAGGGTTTGGATGGTTATACTCCTAGTCAAAATCATCCGGAGAAACGCCAGCCAGTTAATGCAGAAGAAACTCTTCTTCCAAAGGAGGTTCCACAGGGTTTGGAGGGTTATACTCCTAGTCAAAATCATTCGGAGAAACGCCAGCCAGTTAATGCAGAAGAAACTCTTCTTCCAAAGGAGTTTCCACTGGGTTTGTATGGTTATACTCCTCGTCAAAATTATTTGGAGAATCGCCAACCAGTTAAGGTAGAAAAAGCTCTTCTTCCTAAGAAGGTTCCACAGGATTTGGATGATTATTCTCTTAGTCAAAATTCTTTGGAGAATGGCCAACCAGTTAACGTAGAAAAAGCTCTTCTTCCTAACAAGGTTCCACATAGTTTCATTAGTTCTTCTCTTAAGGAGGAAAAGAAGGCTATGGTTAAGGTGCAAGGGCGACGCCGTCTTTGCAAGGTTGCGGATACAGATGCTAGCAAAAATGTGGCAGTTGATGATTCTAAGTTCGATGATCTTGTAGACTTTGATTCGCCTATTCCGGTGCGAAAAAATGTTATTGAAATTGATAAGAGTAGAGGTAAGAGTGATATTAGGGATATTTTGCATGAGCTTAGCTCCAAGTTTGATGCACTATCAGTTGAGAAGAAGCCAAAGCCTGCTGAGCGTTTTGTGGGACGGAAAGAAATTCTTGAAGACGAGGGTTTTGAATTTGGGAGTGCTGGATCTTCATTTTCTCCAGAACAGGAGCCCCATGATTTCTCATCAAAGCATACTAAGAATGATACCAATGGTGTTGGGTATGAGTCAGATGATTCGGTTCAGGTGTTGGATCACCTTGAGCCTGAGAATGATGGTTCTATAACATTGAATGACCCAAGGTCGACATATAAGTTGCAGCCTAAGATTGCGAAGATGTTGTATCCACATCAACGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTATAGCTGGACTGTTTCATTCCCGTTTAATTAGAAGGGTGTTGGTTGTGGCCCCCAAAACACTATTGCCACATTGGATCAAAGAGTTGTCAGTTGTTGGTCTATCTGAGAAAACAAAAGAATATTTTGGAACTTGTGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGAACAGAGGTGTTCTTCTCACCACATATGATATTGTTCGCAACAATACCAAGTCCTTACAGGGGCATAGGTATTTGAACAACGAGGATAATGAAGATGACCCTACGTGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCGAACACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAGTTTCTGCTGCCCTGAGTTGCTTGGTGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCCTCTGACAGAGAGAAGCGTACTGGTTCATCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATACTGAAAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGGTTGTCCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTCGATGGTTCACCGCTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTAACAAAACGGGCGGCTGAGGATGTATTGGAAGGGTTGGACTCAATGCTAAAGCCAGAGGAGGTTAGTGTTGCGGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTAAAGATGAGCATGATGTATCATGCAAAATATCTTTCATCATGTCATTATTGGATAATCTGATCCCTGAAGGTCATAGGGTGCTTATTTTTTCTCAGACTCGCAAGATGCTTAATCTTATCCAGGATTGCATATCATCCAAAGGTTATGATTTTTTACGAATTGATGGCACAACAAAATCCAGTGACAGAATAAAAGTTGTCGATGATTTCCAAGATGGTGTTGGAGCCCCAATATTCCTGTTGACATCTCAGGTTGGTGGTTTAGGACTTACGCTTACAAGAGCAGATCGTGTGATTGTTGTCGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGTGCTTATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAACAGAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTCCCAAAAGAAGGATTCGATGTGTCTGTCACCCAACGACAATTGGATGAGAAACATGATTGTCGACATATAGTGGATGCCTCTTTCCATGCACATATAGAGTTTCTGAAACGTCAGGGCATTGCTGGAATTAGTCACCACAGTTTACTGTTTTCCAAGTCAGAGCCAGTTCAAGATGCTCCTGAGAATGAAGTAACAAGGATTAATAATACTAAATATTTTGGAACTTCATCATCATCTTCACGTGAGCAAACTGTTGACGGAGCTGAGTTTGCTTTTAATCCCAAAGATGTTAATTTACACAAAAAAGACTCTTCTCCAAGTAGTGTTGGTAAGTTGACTGAGTTAGAAATCAAGGATAGAATTGTTCGGCTCTCCCAAATGCTCTCAAATACGGTAATGATTTCGAAATTACCTGACAAAGGAGAGAAACTACGGAAACGGATTACAGAGCTGAATCGAGCGCTAACTAAGCTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACAGATGAATTTGAAAGGGTGGTGAATGTATAA 3642 0.4105 MANKSVKKPQSLNDSHYRFLQDFSAPPKPSSHPLNNDQYDTPIQPRSLMYHDDDTIPQFSAITDFDSPIEEAHLPNQVPQFFDDRSLSQNYSENRQQAEVEEAPIPNKVPQFLDSFSLGQHYAEKHRPVNVEEALFPKEVPQGLNNYSLSQNHPEKHQAVNAEETTLRPKEVLQGLDGYTPSQNHPEKRQPVSAEETTLPKEFPQGLDGYTPSQNHPEKRQPVNAEETLLPKEVPQGLEGYTPSQNHSEKRQPVNAEETLLPKEFPLGLYGYTPRQNYLENRQPVKVEKALLPKKVPQDLDDYSLSQNSLENGQPVNVEKALLPNKVPHSFISSSLKEEKKAMVKVQGRRRLCKVADTDASKNVAVDDSKFDDLVDFDSPIPVRKNVIEIDKSRGKSDIRDILHELSSKFDALSVEKKPKPAERFVGRKEILEDEGFEFGSAGSSFSPEQEPHDFSSKHTKNDTNGVGYESDDSVQVLDHLEPENDGSITLNDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFIAGLFHSRLIRRVLVVAPKTLLPHWIKELSVVGLSEKTKEYFGTCAKAREYELQYILQNRGVLLTTYDIVRNNTKSLQGHRYLNNEDNEDDPTWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFSFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRTGSSIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKQEIIVWLRLSNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPEEVSVAEKLAMHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQDCISSKGYDFLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEKHDCRHIVDASFHAHIEFLKRQGIAGISHHSLLFSKSEPVQDAPENEVTRINNTKYFGTSSSSSREQTVDGAEFAFNPKDVNLHKKDSSPSSVGKLTELEIKDRIVRLSQMLSNTVMISKLPDKGEKLRKRITELNRALTKLKMEQTNVVDLDDITDEFERVVNV* 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1042 1213 Pfam Helicase conserved C-terminal domain 865 977 IPR001650 -
Psa7g1042 1213 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 520 695 IPR014001 -
Psa7g1042 1213 CDD SF2_C_SNF 857 988 - -
Psa7g1042 1213 Gene3D - 482 744 IPR038718 -
Psa7g1042 1213 PANTHER OS04G0692700 PROTEIN 487 1089 - -
Psa7g1042 1213 MobiDBLite consensus disorder prediction 442 466 - -
Psa7g1042 1213 MobiDBLite consensus disorder prediction 178 198 - -
Psa7g1042 1213 SMART ultradead3 503 703 IPR014001 -
Psa7g1042 1213 MobiDBLite consensus disorder prediction 1 38 - -
Psa7g1042 1213 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 868 1027 IPR001650 -
Psa7g1042 1213 PANTHER SNF2/RAD54 FAMILY MEMBER 487 1089 - -
Psa7g1042 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 745 IPR027417 -
Psa7g1042 1213 MobiDBLite consensus disorder prediction 1 18 - -
Psa7g1042 1213 Coils Coil 1173 1193 - -
Psa7g1042 1213 Pfam SNF2-related domain 525 815 IPR000330 GO:0005524|GO:0140658
Psa7g1042 1213 Gene3D - 764 1062 IPR027417 -
Psa7g1042 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 1038 IPR027417 -
Psa7g1042 1213 SMART helicmild6 894 977 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1042 Psa-Chr7 77913827 77924876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1042 508 1031 RAD5 or RAD16-like Gene Family AT1G02670 24.162 2.43e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa7g1042 SNF2_N 2e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1042 K20093 - gmx:100779283 1384.78