Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1035 ATGCCTACACATTGGTGTCACAGGTGCAACAAATCCGTTAGGGTATGGAGGCTAGGGATGCCGATATGTTCCGATTGCGACAGTGGATTCGTCGAAGAGCTTGAACATCAAGCGCATTCTCTTCATGCAGACGCTGTTCGTCCGAGGAGGTTACCTATGACGGCGGCCATGTACATGATCGGCCACCATAATAACAATTCAAATCAAAATCAAAACCCCCGTCGACGTTACTGCAGAAACAATGTTAACGGTGGTGATATTTCTACGTTTAACCCGATCGTTATGATACGCGGCGGTGGAACCTCTGAGGGGACGAGCCGCGAGGGTGAAGAGAATCGCAGGTATGAGCTTTTCTACGAAGATGGCCCCGGCTCTGGTCTCCGGCCATTGCCTCCAAGGATGTCAGAGACTCTTCTTGGGCCTGGATTTGAAAGGGTGATGGGACAACTCTCTAATGTCGAAGCTAATCGGAACGGGAACGAGACGAATAACCGGAAACCATTACCGGCGTCAAAATCAACGGTAGAATCGTTACCGTCTATCGAAATAAATAACAACCATGTTGAGATAGAATCACAATGTGCTGTTTGCAAAGATCATTTCGAACTCGGAGCTGTAGCAAGAGAAATGCCATGCAAACATATATACCATAACGAATGCATACTTCCATGGCTCGAGATTCGTAATTCTTGTCCTATTTGTCGCCATGAACTCCCTTGTGAATCACCACAAAGCAACAATAATGAACAAGACAATGTTGGATTGACAATATGGAGGCTACCGGGAGGAGGATTCGCTGTCGGAAGATTTACCGGCGGAAGTCGAGAGAATAACGAGGGAGAGCTTCCTATTGTTTACACAGAATTGGATGGTGGGTTTAATAATGTTGGTGAACCAAGGAGAATTTCATGGTCGATGAGTACTTCAAATGGAGGAGGGAGGGGAAGAAGTAATATAGGGGGTGGATTTCGTAGAATGTTGAACAATTTGTTTGGATGTTTGGGAGGTGGTGATGGAAGTAGTAATGAACAAGGTTCAATTTCTACAACAAGAGAGTTTTCTGAAACTATGACTACAAGGAATAACAATAATAGTAATGCATCTCGTACCAATCTGAATTCTTCTTCACGTGCTCGTAGAACTTGGTCTATGGATGTAAATGGTGGAATTAGACCATGGTAA 1182 0.4475 MPTHWCHRCNKSVRVWRLGMPICSDCDSGFVEELEHQAHSLHADAVRPRRLPMTAAMYMIGHHNNNSNQNQNPRRRYCRNNVNGGDISTFNPIVMIRGGGTSEGTSREGEENRRYELFYEDGPGSGLRPLPPRMSETLLGPGFERVMGQLSNVEANRNGNETNNRKPLPASKSTVESLPSIEINNNHVEIESQCAVCKDHFELGAVAREMPCKHIYHNECILPWLEIRNSCPICRHELPCESPQSNNNEQDNVGLTIWRLPGGGFAVGRFTGGSRENNEGELPIVYTELDGGFNNVGEPRRISWSMSTSNGGGRGRSNIGGGFRRMLNNLFGCLGGGDGSSNEQGSISTTREFSETMTTRNNNNSNASRTNLNSSSRARRTWSMDVNGGIRPW* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1035 393 CDD RING-H2_RNF126_like 193 235 - -
Psa7g1035 393 Pfam Ring finger domain 193 235 IPR001841 -
Psa7g1035 393 MobiDBLite consensus disorder prediction 352 382 - -
Psa7g1035 393 Pfam Protein of unknown function (DUF1117) 253 366 IPR010543 -
Psa7g1035 393 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Psa7g1035 393 MobiDBLite consensus disorder prediction 155 176 - -
Psa7g1035 393 SMART ring_2 194 234 IPR001841 -
Psa7g1035 393 MobiDBLite consensus disorder prediction 352 393 - -
Psa7g1035 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 3 326 - -
Psa7g1035 393 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Psa7g1035 393 SUPERFAMILY RING/U-box 174 241 - -
Psa7g1035 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 326 - -
Psa7g1035 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 241 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1035 Psa-Chr7 77772412 77774176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1035 143 241 C3H Transcription Factor Family AT5G15820 42.000 2.27e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1035 - K11982 gmx:100789228 404.06