Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0903 ATGCCTTTTCAAGTTATGGATCAGAGGGGTGATAATTTTTTCGATGATATTTCGTTTCATTCTGAGAGGAACGTTGGATTGAGGAAGCCGAAATACATGAATGTCCAACACCCCCAAGGAATGAATGGAATGATAGCGCCACCTGGCAACAGATTGAATGCTTCATCACCCTTTGAAGTAAACGCAAAATCTGGATTTCCGATGTCACAGACTAATCTATCTGAGGGAAGCGTAGAAAAGCTACCTGACATTGCTGATGTATTGAAAGGTTCCAGGGAATCATTTCATCACAATCCCCAACCATGGTCTGATGTTTTTAGGCAGTCAGCACCGACCTCGCATCGCTTAATCGGGAACAAGCTTGTCGCGAATAATGCTGTCCATCGAGAAAGTAGTTTGTTCTCTAGCTCGCTGTCGGATATGTTTACCATAAACTTGAATTTATTGGGGAATGATCTTCTGTCCGACCAGCCGGCTGCTTCCGGTTCGCTTCTGGAGGAAGATCCGTATAAATCTCTTGAAGAGATGGAGGCTCATTATATACATAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGAATTCAATTCTCATACTAGGACGAACGATGATTCCGAAGATTTTGATTTGTTTAGCAGCGGCGGAGGCTTGGAGCTGGAAGGAGATGAACATTTAAGTTCGCTGAAAAGAGCAACTGGTTTGGATGGAGATCACGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTCGTTGAACAGCCTTCAAGAACACTTTTTGTTCGAAACATCAATAGCAACGTTGAGGACTTCGAGCTGAAGACTCTATTTGAGCAATATGGAGATATCAGAACTATTTATGCGGCTTGCAAGCATCGCGGGTTTGTCATGATCTCTTATTTTGATCTAAGGGCTGCACAGAAAGCAATGCAAGCCCTTCAGAGTAGGCCATTGAGGTCTAGGAAGCTGGACATACATTATTCGATTCCCAAGGTTAATGCTCCAGAGAAGGATATTGGCCATGGTACACTGATGTTATCTGGTCTCGATTCATCTGTTTTAAATGATGAGCTTAGACATATCTTTGGATTTTACGGAGAAATCAAAGAAATCTATGAATATCAAGAAATGAAGCATCTCAAGTTTATTGAGTTTTATGACGTGCGAGCTGCTGAAGCTGCACTTCGGGCATTGAACCGGATTGAATTTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGTTTGCAACACGTCTGATGCAGCAGTCTCATAAGGTGCAAGATGAACGAGATCTTGGTCAGAGCATTATTGACAACTTACAACTACGACAAAAGCCAACACTGTCGTCTGGAGTAATTGATTCTGCTGGTTTGGAAAATGGATACAACCAGAGGTTTCAATCTGCAATGCGGCAACAGCCTTTGAATGGATTTACCGATAATGCCTTCTTTCATGCCAATTCCAACGTTCAAAACGCTTTGAGAGGGGCATCTGTTGGAAAAGTTTCTGGTGTTCCCGAGTCCACTAACCTTGTCGATGCAATGAAATTTGCGTCTAGTCCAACAACATTTCATCCTCATTCTCTACCAGAGTATCATGCTAGCTTGTCTAATGCTAGTCCTTATAACTTTTCAAGCACCATTGGCAACAAGGCTGGTAATATAGGCGCTGGAGTGACGGAAGCCTCTAATGGAAGGCATATCCAAGGAATAAGCTCGGTTGGGAACTTAGCAGAATTCAATGGAGGAGGGTCATCAGGAAACGGCATCCGCGCGCATCATGGGCTTAATCATATGTGGAGCAGCTCCAATTCGCATCAGCAATCTTCACCGAGTAACATGCCTTGGCAGAAAACCCCGCCATTTGCTAATGGTTCTCCAGGCTTGCCTCAGATGTCAAGCTTTGCTAGAACACCACCTCATATGCTGAGAACACAACATTTGGACCATCATGTTGGATCGGCACCGGTTGTTACAGCCTCTCCTTGGGACAGGAAAAACTCTTACCTGGGAGAATCTCCTGATGCTTCTGGTTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTTCATGGTTCTTGGCAAATGCGTTCCTTGGACTTTTCTCCTCATAATAACATGTTTTCACATGTTGGTGGGAACAGTACTGAACTATCGTCCAGTGCCGGGCAGAGCTCGCCTAATCCATTGTCTCATATTCTCTATGGGAGACAGCATCCTGCGACTACAGTGTCGAAATTTGATCCTACCAATGATCGAATGAGAAACCTTTATAGTCGTAAAAGTGAAGCAAACACCGTTAGCTTGGCTGATAGGAAACAATATGAACTTGATCTGGGCCGCATACTCCGTGGAGAAGACATCCGAACAACGCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGCAATGTCGGGGAACTTATGACTTTCTGTACTTACCAATTGACTTCAAGAACAAATGTAATGTTGGATATGCATTCATAAATATGACCGATCCTGCTCAAATCATTCCTTTCCACCAGGCTTTCCATGGTAAAAAGTGGGAGAAGTTTAACAGTGAAAAAGTAGCATCACTTGCATATGCTCGAATTCAAGGAAGAGCTTCTCTTGTCGCTCATTTCCAGAATTCAAGCCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTCTTTCAAACAGAAGGCCCAAATGCCGGCGATATGGAGCCTTTTCCAATCGGAGCCAACGTTAGAGTTCGACCTGGAAAAATTCGCAACGCTGGCAACGAAGAGAATCGCGTCCAAGCTCCTCCTTCAACTTTAGCAAGCGGAGAAGAGTCTGCAAACGGAAACTCCGACTGA 2889 0.4375 MPFQVMDQRGDNFFDDISFHSERNVGLRKPKYMNVQHPQGMNGMIAPPGNRLNASSPFEVNAKSGFPMSQTNLSEGSVEKLPDIADVLKGSRESFHHNPQPWSDVFRQSAPTSHRLIGNKLVANNAVHRESSLFSSSLSDMFTINLNLLGNDLLSDQPAASGSLLEEDPYKSLEEMEAHYIHNLLPDEDDLFSGVVDELEFNSHTRTNDDSEDFDLFSSGGGLELEGDEHLSSLKRATGLDGDHGFFGGSKGKLPFVEQPSRTLFVRNINSNVEDFELKTLFEQYGDIRTIYAACKHRGFVMISYFDLRAAQKAMQALQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELRHIFGFYGEIKEIYEYQEMKHLKFIEFYDVRAAEAALRALNRIEFAGKQIKLEPGHPRFATRLMQQSHKVQDERDLGQSIIDNLQLRQKPTLSSGVIDSAGLENGYNQRFQSAMRQQPLNGFTDNAFFHANSNVQNALRGASVGKVSGVPESTNLVDAMKFASSPTTFHPHSLPEYHASLSNASPYNFSSTIGNKAGNIGAGVTEASNGRHIQGISSVGNLAEFNGGGSSGNGIRAHHGLNHMWSSSNSHQQSSPSNMPWQKTPPFANGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWDRKNSYLGESPDASGFHLGSPGNGGFHGSWQMRSLDFSPHNNMFSHVGGNSTELSSSAGQSSPNPLSHILYGRQHPATTVSKFDPTNDRMRNLYSRKSEANTVSLADRKQYELDLGRILRGEDIRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKIRNAGNEENRVQAPPSTLASGEESANGNSD* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0903 962 MobiDBLite consensus disorder prediction 941 962 - -
Psa7g0903 962 MobiDBLite consensus disorder prediction 932 962 - -
Psa7g0903 962 Pfam RNA recognition motif 2 795 891 IPR007201 -
Psa7g0903 962 Gene3D - 256 345 IPR012677 -
Psa7g0903 962 SUPERFAMILY RNA-binding domain, RBD 797 881 IPR035979 GO:0003676
Psa7g0903 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 335 IPR000504 GO:0003723
Psa7g0903 962 CDD RRM1_MEI2_like 261 336 IPR034453 -
Psa7g0903 962 SMART rrm1_1 263 331 IPR000504 GO:0003723
Psa7g0903 962 SMART rrm1_1 797 873 IPR000504 GO:0003723
Psa7g0903 962 SMART rrm1_1 348 416 IPR000504 GO:0003723
Psa7g0903 962 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 959 - -
Psa7g0903 962 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 959 - -
Psa7g0903 962 SUPERFAMILY RNA-binding domain, RBD 259 419 IPR035979 GO:0003676
Psa7g0903 962 Gene3D - 346 442 IPR012677 -
Psa7g0903 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 328 IPR000504 GO:0003723
Psa7g0903 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 414 IPR000504 GO:0003723
Psa7g0903 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 420 IPR000504 GO:0003723
Psa7g0903 962 CDD RRM3_MEI2_like 798 883 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0903 Psa-Chr7 68349002 68355578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0903 259 413 Eukaryotic Initiation Factors Gene Family AT3G16380 27.841 3.88e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0903 - - gmx:100797893 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0903 7 68349002 68355578 Psa7g0903 7 68349002 68355578 ECH