Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0900 ATGAGAACAACACGCCAGGCTAAAACCTCTTACCAAGGGAAGGACCGAGAGATCAGTAGGACCATCGGTGAACTCTGGAACAAGTTAAATGAATCTGAAAAAGCAGTTTATCAAGAACAAGCCATGAAGGACAAAGAGAGGTACAAACAGAAATGGAGTGTTACCGTGAGAAGGTTTATCTATCAAGCAAAGTTTGCAATATCACAGTTATCCAAGGTAGATAGAGGTGACGATACTGATACTGTGAAGTTCTCTGAATTGCTTCATTGTCATCATTCTAAAGGCGATATCAATGATCATTCAAGCCACAGGAGCAAGTTCACTTTTACTAAACACGGGAGCTGCTTACCTATCTGTTGGTGGCATGCTAATGTCTGTAATTTCCTTGTTGGGTTACTGTTCTTGCGTTTACCGGAGAAATCTGGTCCACAACTGCTTTACTCAATGTTTGCTACATTCTGCATGATGCAGTAA 474 0.4114 MRTTRQAKTSYQGKDREISRTIGELWNKLNESEKAVYQEQAMKDKERYKQKWSVTVRRFIYQAKFAISQLSKVDRGDDTDTVKFSELLHCHHSKGDINDHSSHRSKFTFTKHGSCLPICWWHANVCNFLVGLLFLRLPEKSGPQLLYSMFATFCMMQ* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0900 157 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 57 - -
Psa7g0900 157 CDD HMGB-UBF_HMG-box 16 51 - -
Psa7g0900 157 SUPERFAMILY HMG-box 15 52 IPR036910 -
Psa7g0900 157 Pfam HMG (high mobility group) box 16 51 IPR009071 -
Psa7g0900 157 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 57 - -
Psa7g0900 157 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1 56 IPR009071 -
Psa7g0900 157 Gene3D High mobility group box domain 1 70 IPR036910 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0900 8 49 ARID Transcription Factor Family AT1G04880 69.048 2.84e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa7g0900 HMG_box 4.6e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0900 - - mus:103996022 73.1738