Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0898 ATGTCATTGAGAAAAAGCACTAAAATTGATATTGCCACTATCGTAGAAGAGGAACTGAAGATTGCAAGAACGTCGTTTGAGGAGGCCCGATTCAGTCTGGTTGGTGCTCTTAATAACATTGAGATCAAGAAGAGATTTGAGTTTTTGGAGGTTGTCACTGGAGTTATGGACGCCCATCTTCGATACTTTCAACAGGGATATCAGCTACTACATCAGATGCAACCTTTCATTATCGAGGTTTTGGATTATGTACAACAGTCAAAAGAAAGTTTCGATAAGGACCAGCTTTTACTTTTTAAAAGAATGCAAGAATACAAAAAACAAGTTTATCAAGAAAGTAGGCTGTCCTTAAATGGCCCTTACGGTTCTCCTAGTGGAGAATCTGTGCATCCTTTTTCTAGGATATCAAATGAAGTAGTAGATGTAGTAAACGAATCTGCGGCAAATGGAAAGGTTCAAATCATTCGACAAGGGTATCTTTCAAAGCGATCTTCCAATTTGAGAGGCGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCATGGCATATGGCAGCAATCAATCATCTCCAAGGAAGAGTAGTGCCACTGATAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGCGTCCATGATGAAAAATCTGTAGTACGTCATACAGTAAATCTGCTAACGTCAACAATCAAGGTTGATGCTGATCAGTCGGACTTAAGATTTTGCTTCAGAATAATTTCGCCATCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGAATGGATGGAAAAGATAAATGGAGTTATTGCCTCCTTGTTGAGTATCCAGACACTGGGATCACCTCTATCAGCTGACTCAGAAAACGGCGACTCTTACTTTACCAATAAGAGTAATGTGTTCGAAAGTTCTCCAGAAGATGATCTCATTGAGCTTGAAAAGGCTGCCTCCACGAACTTCACTTCTAGTAACCATTTACATTCATCTAAAAGTATGCAGTTTCCTAAACACAGTATAAGAAATGAAAAACCTATTGATGTTCTTAGAAAGGTGAACGGGAATGACATATGTGCTGATTGTGGTAGACCTGAACCAGATTGGGCATCTTTAAACCTTGGCATCCTTATATGCATTGAATGCTCTGGTGTTCATCGTAATCTTGGTGTGCATATATCTAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGACTACTCTGTCTTAAGTATGTTTGAGTCCCTGGGTAATCATTTTGCAAACTCAGTTTGGGAGGAGTTGTTATGTTCAAGGAGTACTTTGCAAAATGTTGACACCCCTGCTGGTTCATCCAAGGCAAACAAAGACAAGCTATTTCATGCAAGAAAGCCAAAGCATGATGATTCTAGTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATGCTGAGAAAGTATTTATTTGCCGGACAGACGAAAACCCCGCGCAACAGATTTTGAAAAGCATATGCGCTAATGACAAGAAGGCAGTGTACCAGCACATTGTCAAGTCAGATATGGATATCAATACCATCAGTAGGCAAGCATTTTCTGGTGGCTCTTTCAACGCGGCTTCTTTGATTAATTTAAACATTTCATCTGAAAGTGAGAATCAGTTGATTGAGGACATACAAAATGGTTCTAGTGTGCTTCACCTGGCTTGCCTAGCAAGTGATGCTGGTATGGTGGATCTGCTCCTACAGTATGGAGCAGATATAAACGCTTGCGATTCAAGAGGCCGGACACCACTACATTACTGTATTACCAGGGGGAAGCTTGCAGCTGCAAAAGTGCTTCTTGTGAGGGGGGCCAATCCTCATGTAGCTGACAAAGAAGGCCACACTCCTCTTAAGCTTGCATCAGAAACCGACAGTTTAGGCAATGAAATTCTCAGTCTCTTAGCAAAATATAACAATGCCCAAAAACAATTATAA 2004 0.4067 MSLRKSTKIDIATIVEEELKIARTSFEEARFSLVGALNNIEIKKRFEFLEVVTGVMDAHLRYFQQGYQLLHQMQPFIIEVLDYVQQSKESFDKDQLLLFKRMQEYKKQVYQESRLSLNGPYGSPSGESVHPFSRISNEVVDVVNESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSMAYGSNQSSPRKSSATDNGSGLLSRWLSSHYHGGVHDEKSVVRHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMEWMEKINGVIASLLSIQTLGSPLSADSENGDSYFTNKSNVFESSPEDDLIELEKAASTNFTSSNHLHSSKSMQFPKHSIRNEKPIDVLRKVNGNDICADCGRPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDYSVLSMFESLGNHFANSVWEELLCSRSTLQNVDTPAGSSKANKDKLFHARKPKHDDSSSLKERFIHAKYAEKVFICRTDENPAQQILKSICANDKKAVYQHIVKSDMDINTISRQAFSGGSFNAASLINLNISSESENQLIEDIQNGSSVLHLACLASDAGMVDLLLQYGADINACDSRGRTPLHYCITRGKLAAAKVLLVRGANPHVADKEGHTPLKLASETDSLGNEILSLLAKYNNAQKQL* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0898 667 Gene3D - 146 297 IPR011993 -
Psa7g0898 667 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Psa7g0898 667 SMART arf_gap_3 360 504 IPR001164 GO:0005096
Psa7g0898 667 SUPERFAMILY Ankyrin repeat 513 660 IPR036770 -
Psa7g0898 667 SMART ANK_2a 602 631 IPR002110 GO:0005515
Psa7g0898 667 SMART ANK_2a 635 666 IPR002110 GO:0005515
Psa7g0898 667 SMART ANK_2a 569 598 IPR002110 GO:0005515
Psa7g0898 667 SMART PH_update 154 291 IPR001849 -
Psa7g0898 667 ProSiteProfiles Ankyrin repeat region circular profile. 569 600 - -
Psa7g0898 667 Pfam BAR domain of APPL family 14 93 - -
Psa7g0898 667 SUPERFAMILY ArfGap/RecO-like zinc finger 359 499 IPR037278 -
Psa7g0898 667 Gene3D - 507 666 IPR036770 -
Psa7g0898 667 SUPERFAMILY BAR/IMD domain-like 8 77 IPR027267 -
Psa7g0898 667 Pfam PH domain 155 288 IPR001849 -
Psa7g0898 667 CDD ArfGap 363 492 - -
Psa7g0898 667 CDD PH_ACAP 156 293 - -
Psa7g0898 667 PRINTS HIV Rev interacting protein signature 372 391 IPR001164 GO:0005096
Psa7g0898 667 PRINTS HIV Rev interacting protein signature 391 408 IPR001164 GO:0005096
Psa7g0898 667 PRINTS HIV Rev interacting protein signature 414 435 IPR001164 GO:0005096
Psa7g0898 667 Gene3D Arfaptin homology (AH) domain/BAR domain 1 111 IPR027267 -
Psa7g0898 667 SUPERFAMILY PH domain-like 64 288 - -
Psa7g0898 667 PANTHER CENTAURIN/ARF 1 659 IPR045258 GO:0005096
Psa7g0898 667 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 659 - -
Psa7g0898 667 ProSiteProfiles PH domain profile. 153 289 IPR001849 -
Psa7g0898 667 ProSiteProfiles ARF GTPase-activating proteins domain profile. 360 508 IPR001164 GO:0005096
Psa7g0898 667 Pfam Putative GTPase activating protein for Arf 363 498 IPR001164 GO:0005096
Psa7g0898 667 Gene3D Arf GTPase activating protein 340 506 IPR038508 -
Psa7g0898 667 ProSiteProfiles Ankyrin repeat region circular profile. 602 634 - -
Psa7g0898 667 Pfam Ankyrin repeats (3 copies) 574 664 IPR002110 GO:0005515
Psa7g0898 667 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0898 Psa-Chr7 68179886 68201134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0898 372 498 C2H2 Transcription Factor Family AT4G21160 44.531 6.27e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0898 K12489 - gmx:100792517 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0898 7 68179886 68201134 Psa7g0898 7 68179886 68201134 ECH
Psa7g0898 7 68179886 68201134 Psa5g1279 5 98583719 98595961 PCT