Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0887 ATGTTTGGGATGAGAGATCTGGAGGAAGAAAGAGAGAGAAGAGATAACATGGCGTCATCAGAGGTTTCTATGAAGGGGAATTGTGTTAATGGAAAAGGTGAAACAAACGATGGTGTTGGAGATGGTCAAAATGGCTCTTCATCTTCATCTTCAGGAGAAGCTGAAGTTCAACTTTACAGAGAGCTATGGCATGCTTGTGCGGGACCGTTGGTGACGGTTCCAAGAGAAGGAGAGCTTGTGTTTTATTTTCCTCAGGGACATATTGAACAGGTGGAGGCTTCGACGAATCAAGCGTCGGAACAACACATGCCGGTTTACGATCTCCGGCCTAAGATCCTCTGTCGGGTCATCAACGTTATGTTGAAGGCGGAGCCAGATACTGATGAGGTGTTTGCACAAGTGACTTTGGTTCCACAGCCAAATCAAGATGAGAATGCGGTTGAGAAAGAAGCTCCTCCTGCTCCTCCTCCGCGGTTTCATGTTCATTCGTTTTGTAAAACATTGACAGCTTCTGATACTAGTACCCATGGTGGGTTTTCTGTTCTTAGACGTCATGCCGATGAATGTCTTCCTCCGCTGGACATGTCAAAGCAACCACCTACACAGGAGTTGGTGGCAAAAGATCTGCATGGAAATGAATGGCGTTTTAGACACATCTTTCGTGGTCAACCGCGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTGGTTGCTGGAGATGCATTTATATTTCTAAGAGGGGAGAATGGGGAGCTTCGAGTTGGTGTTAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCCTCGGTTATCTCTAGCCACAGCATGCATCTCGGTGTTCTTGCAACTGCTTGGCATGCCGTGTTGACAGGGACCATGTTCACTGTCTATTACAAACCTCGGACCAGTCCAGCGGAATTCATTGTTCCATATGATCAGTACATGGAGTCGCTCAAAAATAATTATACCATAGGCATGCGGTTTAAGATGAGGTTTGAGGGTGAAGAGGCTCCTGAGCAAAGGTTTACAGGGACCATCGTTGGAATCGAAGACACCGACACTAAAAGATGGCCTAAATCTAAATGGAGGTGTCTCAAGGTTAGATGGGATGAAACGTCTAACATACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTAAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGAGCTAACATTGTTCCATCATCTCCAGATTCTTCTGTTCTTACCCGCGAAGCATCGTCTAAAGTAAGCATGGACCCTTTGCCCACTAGCGGTTATCAAAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGAAATTTGGCCGAGAGTAATGAGTCTTATACTGCAGAGAAGTCTGTCGTGTGGCCATCTGCAAATGATGAAGAAAAGATTGATGCTGTTTCTACTTCAAGAAGGTATGGATCGGAGAACTGGATGTCAATGTCAAGGCAGGAGCCAACGTATTCGGATCTTCTATCAGGGTTTGGTAGTGTCAGAGGAGATCATTCTTCCCAACAGTTGTTCGTCGATCAAACTGGTCACCTGATCAACCACACTAGGAAAAGTTTGTTGGATCGCGATGGCAAACATAACATGCTTAGTCAGTGGCCTGTAATGCAACCTGGTCTGTCGCTCAATTTCTTGCACTCTAATATGAAAGGTTCTCCACAAGGCGGAGATAATTCACCGTACCAAGTTCAAGGTAATATGAGATACAATGCCTTTGGTGACTACTCTGTGCTTCATGGACATAAAGTTGAAAATCCACATGGAAACTTTTTGATGCCGCCGCCACCTCCAACTCAATATGAGAGTCCTCGTTCAAGAGAACTTCCTCATAAACAAATATCTGCAACTACATCTGAGTCTGCAAAACACAAAGACGGCGAATGTAAGCTATTCGGCTTCTCGCTTCTCAGTAGCCCTACCATGCAAGAGCCTTCAATATCTCAAAGAAATAGCACAAGCGAGACAGTTAGTCCCATGCAAATTTCATCACAACGACATCATACATTTGAAAATGATCAGAAGTCCGAGCATTCAAAGTGCTCAAAAGGGCCAGAAAATCCAGTTGCAGTTGATGACCAAGAGAATCTATTGCAAACTCCTCAATCTCATTTTAAAGATGTTCAACTCAAATCCCAAAATGGTTCTGCTCGAAGTTGCACAAAAGTTCACAAGAAAGGTATCGCTCTTGGTAGGTCGGTTGATCTTACAAAGTTTAACGACTATGATGAACTAGTCACTGAATTGGATCAACTATTTGAATTCGGAGGCGAATTGGTTTCTCCACAAAAGGACTGGCTTGTTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTTTGCGCCATGGTACGCAAGATTTACATCTACCCAAAAGAGGAGATTCAGAAAATGAGCCCCGGTACATTGAGTTCTAAAAATGAAGAGAATCATTCAGCTACCGAAGGCGGAGGAGAAGCACAAGAAACAAAATGTCAGATGAATCAAACAACTTCAGATGCTTGA 2595 0.4474 MFGMRDLEEERERRDNMASSEVSMKGNCVNGKGETNDGVGDGQNGSSSSSSGEAEVQLYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVMLKAEPDTDEVFAQVTLVPQPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDTDTKRWPKSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANIVPSSPDSSVLTREASSKVSMDPLPTSGYQRVLQGQESSTLRGNLAESNESYTAEKSVVWPSANDEEKIDAVSTSRRYGSENWMSMSRQEPTYSDLLSGFGSVRGDHSSQQLFVDQTGHLINHTRKSLLDRDGKHNMLSQWPVMQPGLSLNFLHSNMKGSPQGGDNSPYQVQGNMRYNAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPRSRELPHKQISATTSESAKHKDGECKLFGFSLLSSPTMQEPSISQRNSTSETVSPMQISSQRHHTFENDQKSEHSKCSKGPENPVAVDDQENLLQTPQSHFKDVQLKSQNGSARSCTKVHKKGIALGRSVDLTKFNDYDELVTELDQLFEFGGELVSPQKDWLVVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENHSATEGGGEAQETKCQMNQTTSDA* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0887 864 Gene3D - 161 266 IPR015300 -
Psa7g0887 864 SUPERFAMILY CAD & PB1 domains 741 817 - -
Psa7g0887 864 MobiDBLite consensus disorder prediction 417 435 - -
Psa7g0887 864 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Psa7g0887 864 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 847 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa7g0887 864 MobiDBLite consensus disorder prediction 662 689 - -
Psa7g0887 864 MobiDBLite consensus disorder prediction 828 864 - -
Psa7g0887 864 MobiDBLite consensus disorder prediction 662 709 - -
Psa7g0887 864 CDD B3_DNA 162 264 IPR003340 GO:0003677
Psa7g0887 864 Gene3D - 736 829 - -
Psa7g0887 864 MobiDBLite consensus disorder prediction 1 19 - -
Psa7g0887 864 MobiDBLite consensus disorder prediction 690 704 - -
Psa7g0887 864 ProSiteProfiles PB1 domain profile. 740 822 IPR000270 GO:0005515
Psa7g0887 864 PANTHER AUXIN RESPONSE FACTOR 2 45 847 - -
Psa7g0887 864 MobiDBLite consensus disorder prediction 1 53 - -
Psa7g0887 864 MobiDBLite consensus disorder prediction 37 53 - -
Psa7g0887 864 Gene3D - 327 397 - -
Psa7g0887 864 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Psa7g0887 864 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa7g0887 864 MobiDBLite consensus disorder prediction 621 646 - -
Psa7g0887 864 Pfam AUX/IAA family 713 827 IPR033389 -
Psa7g0887 864 SMART B3_2 164 266 IPR003340 GO:0003677
Psa7g0887 864 MobiDBLite consensus disorder prediction 413 435 - -
Psa7g0887 864 SUPERFAMILY DNA-binding pseudobarrel domain 160 293 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0887 Psa-Chr7 66806124 66812470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0887 17 864 B3 DNA Binding Superfamily AT5G62000 63.730 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa7g0887 AUX_IAA 7e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0887 - - gmx:100780892 1349.73