Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0833 ATGGAGTGGAACAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGAACAAGGAACCTTAAACAACATAGAACCAATGGATGGTTCAAGGAGTTTTGGATTTGGAGATTATACAACAAAAGGGGAATTTTCTGTTGACTTGAAACTTGGCCAAGTTGGAAATTCTAGCACTGAATTATCAAAATCCAAAGATGTCGCTGTGGTTGGTGTTGGTGGAGTTGGAGGAGTTTCGAAAATGTCATCTTCATCGTCTTCAACAACTTCGGGTTCTTCTAAGAGAGCTAGAGCTATTAACAATGGAACTCATATAGTTTCATGTCTTGTTGATGGTTGTCAAGCTGATCTTAGTAACTGTAGAGACTATCATAGACGCCATAAGGTTTGTGAACTTCATTCCAAGACTGCTCAGGTCACTATTGGTGGACATAAACAAAGGTTCTGCCAACAATGTAGCAGGTTTCATTCACTAGAGGAATTTGATGAAGGAAAAAGGAGTTGCAGGAAACGTTTAGATGGGCACAACAGAAGAAGAAGAAAGCCACAAGCAGAAGCTATAAGTCGATCTAGTAGCTTTTTGTCCAATTACCAAGGAACTCAGTTGTTACCCTTCTCAAGTTCGCATATATACCCTTCAACTGCTATGATGAACCCTACTTGGGGTGGAACTGATGTTAGAGTCCATAGTCAACACCAACAACAAATGCACCATCTTGTCCTAGGAACAACATCTCCAACAACCAACAACAGCTACAAAGAAGGGAAACAAGTGTCATCGTCGTCATCATCGTCGTTCATTCATCATGCTACTAACCACCAAACTCATCAACATCTTTCATCTTCTTCCATGAATCCATCTTTTAACCGGACCAATCCTTTTTCAGAAAGATGCAAAATGTTTGGTGACAACAGCAGCAACAACAACAATAACACTACTTGTTTGAGTTTGCATGATCATAGCTTGGGGTCGGTGGACCATGTTTTGGGTCCAAATGATCAGAGTGGTCATTGTTCATCCATTTATAACATGGGATCTAATGAATCACATTCTCAGGGAAATGATAATGATGCTCCTCCTCCATTATATCCTTTTCAATGGGATTAG 1104 0.3995 MEWNNLKAPSWDLTEMEQGTLNNIEPMDGSRSFGFGDYTTKGEFSVDLKLGQVGNSSTELSKSKDVAVVGVGGVGGVSKMSSSSSSTTSGSSKRARAINNGTHIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEAISRSSSFLSNYQGTQLLPFSSSHIYPSTAMMNPTWGGTDVRVHSQHQQQMHHLVLGTTSPTTNNSYKEGKQVSSSSSSSFIHHATNHQTHQHLSSSSMNPSFNRTNPFSERCKMFGDNSSNNNNNTTCLSLHDHSLGSVDHVLGPNDQSGHCSSIYNMGSNESHSQGNDNDAPPPLYPFQWD* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0833 367 Gene3D - 98 168 IPR036893 GO:0003677|GO:0005634
Psa7g0833 367 MobiDBLite consensus disorder prediction 171 190 - -
Psa7g0833 367 ProSiteProfiles Zinc finger SBP-type profile. 104 181 IPR004333 GO:0003677
Psa7g0833 367 SUPERFAMILY SBT domain 105 186 IPR036893 GO:0003677|GO:0005634
Psa7g0833 367 Pfam SBP domain 107 180 IPR004333 GO:0003677
Psa7g0833 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 10 314 - -
Psa7g0833 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 314 IPR044817 GO:0003677
Psa7g0833 367 MobiDBLite consensus disorder prediction 346 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0833 Psa-Chr7 60542282 60545484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0833 1 227 SBP-box Gene Family AT5G50670 51.282 3.88e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa7g0833 SBP 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0833 - - cam:101507938 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0725 1 47056268 47058531 Psa7g0833 7 60542282 60545484 ECH
Psa7g0833 7 60542282 60545484 Psa7g0833 7 60542282 60545484 ECH
Psa7g0833 7 60542282 60545484 Psa5g1219 5 94994980 94997052 PCT