Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0817 ATGGATCAGCATGTGACCCAAAGTAATGTTAAAAAGCCAGTGTGGATTGAGGATTTTCTTGAGGGAAATTTCTTTGACTCATGTTCTCTTCATCAAACTCGTAAAAATGAGTTAAATAAGTATTGTATTTATTGCAATAAGTTATGCTGTCAATTTTGTGTATCTTTTGGTCTTCATCGCCATCATAAGATGCTTAAAGTATCTAGACATGCTTACAAGGATGTTGTCTCCCTGGGTGCAATGGAAAAGTACTTCGATTGTTCCCAAATTCAGACATACAAATGCAACAGGCGAGTGGTTATTTCTTTGAATCCTCTCCAACTCAATGAGCCATCATCAAATGTTGAAGAATCATGCAAAGCTTGCAACAAAAAGTTGAATGACCCTCATTTATATAGCTATTGCAGCATTTCTTGCAAGAATGAAGCCCTTTCGAAAAAGCCTGAACCTGAGGATCCTGCTAGCATAATAATAATTGAGTCTTCTTCGGAACCTTCTATGGAGAGTCCTCCTCATCCTCTTCCTCTTCGTCGTCCCCCGCAGGAGATAACTTCTGAACCATCCAAAAGAAAAAGGAGAAGAAAGGGAAGCCCCCATAGAAGCCCCTTCGGAACCCAACAGAAATGCAAGACTTGCGATAAAACTGTTCATTTGGTTGATACATTATCTGCTGATGGTAATGTTTATCACAAAAACTGCTTCAGATGTCATCAATGCAATGGCCTTCTTGCGATGAGCAGCTATACATCAAATGAAGGAATTTTGTATTGCAAGACTCATGCTGAGCAGCTTTTAAAGGATTCTGCACTCAAGAAATCCCCGTCAGGAAAGCCCAGCGAATTGCCTAGGGCCCCAAGCAAACTTTCTGCTTTCTTCTCAGGGACTCAAGAAAAATGTTCATCATGCAAGAAAACTGTATATCCATTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGGTGTACACATGCAGGATGTTTTCTGAGCCCTTCATCGTATGCTGCTCTTGACGGATACATATACTGCAAGCCGCACTTTTCTCAACTGTTTAAGGCTAAAGGTAGCTATAGTTATCTCTCCAAACAAGCTTCATTGAAGAAAAGCGAAGAAGCGTTGCAACAGGCTGCAGAAGAGAAATCTGGCGATAATTCAGAAGCAGCATCCGATGCAGAAACAAAGGAAGAACAACAAGATCCTGCTGATGTGACAGAAGAGGTGTAG 1236 0.4078 MDQHVTQSNVKKPVWIEDFLEGNFFDSCSLHQTRKNELNKYCIYCNKLCCQFCVSFGLHRHHKMLKVSRHAYKDVVSLGAMEKYFDCSQIQTYKCNRRVVISLNPLQLNEPSSNVEESCKACNKKLNDPHLYSYCSISCKNEALSKKPEPEDPASIIIIESSSEPSMESPPHPLPLRRPPQEITSEPSKRKRRRKGSPHRSPFGTQQKCKTCDKTVHLVDTLSADGNVYHKNCFRCHQCNGLLAMSSYTSNEGILYCKTHAEQLLKDSALKKSPSGKPSELPRAPSKLSAFFSGTQEKCSSCKKTVYPLEKLTVEGEFYHKSCFRCTHAGCFLSPSSYAALDGYIYCKPHFSQLFKAKGSYSYLSKQASLKKSEEALQQAAEEKSGDNSEAASDAETKEEQQDPADVTEEV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0817 411 MobiDBLite consensus disorder prediction 162 206 - -
Psa7g0817 411 Pfam PLATZ transcription factor 69 140 IPR006734 -
Psa7g0817 411 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 325 363 - -
Psa7g0817 411 ProSiteProfiles LIM domain profile. 207 267 IPR001781 -
Psa7g0817 411 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 268 - -
Psa7g0817 411 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 234 - -
Psa7g0817 411 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 203 403 - -
Psa7g0817 411 Gene3D Cysteine Rich Protein 293 363 - -
Psa7g0817 411 MobiDBLite consensus disorder prediction 374 411 - -
Psa7g0817 411 Pfam LIM domain 299 354 IPR001781 -
Psa7g0817 411 Pfam LIM domain 209 260 IPR001781 -
Psa7g0817 411 PANTHER OS06G0237300 PROTEIN 203 403 IPR045268 GO:0051015
Psa7g0817 411 MobiDBLite consensus disorder prediction 376 404 - -
Psa7g0817 411 Coils Coil 363 390 - -
Psa7g0817 411 Gene3D Cysteine Rich Protein 194 269 - -
Psa7g0817 411 ProSiteProfiles LIM domain profile. 297 357 IPR001781 -
Psa7g0817 411 ProSitePatterns LIM zinc-binding domain signature. 209 243 IPR001781 -
Psa7g0817 411 ProSiteProfiles Zinc finger B-box type profile. 28 67 IPR000315 GO:0008270
Psa7g0817 411 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 291 324 - -
Psa7g0817 411 SUPERFAMILY B-box zinc-binding domain 27 71 - -
Psa7g0817 411 CDD Bbox2 28 67 - -
Psa7g0817 411 SMART lim_4 298 350 IPR001781 -
Psa7g0817 411 SMART lim_4 208 260 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0817 Psa-Chr7 59363649 59368536 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Psa7g0817 PLATZ 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0817 - K24413 gmx:100499865 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0817 7 59363649 59368536 Psa7g0817 7 59363649 59368536 ECH