Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g0717 | ATGGGCGGTTGTTGCTGTTGTGCCTCCAAGGAGACTGTGTTGAGTGCTCCACCTGCTTACTATTTTCAGTATCCAAGAGCATCAGATGAGCATGTTCCACTATCTTCTCATCAAGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGTCCTGATACTTATACACCCCCTCCTGCTCCTATCCCTTTCAACGTGACATTCGATGCCACTCAGACTGCACCTGTGGTTCAAGAAATTTCCTGCGACAAGAACAATACAAATTCTAATTCAGTTCAAGAACCATCTGGAGACAATCATGGAACCTCACCTAAGTCAGAAGAACTGAAGGAATCAGAATGCAAAGGTCAGACTGATTTAGAACTAGACTCGGCAAAGGATTCTGAAATTGAACTTCCAAAGTTGGGAGAACCTATAAATTTAGTAGAAGAAGAGGATGGATGCCCGATATGTTTAGAAGAATATGATGCAGAGAATCCAAAACTAACCACAAAGTGTGAGCATCACTATCACCTTGCTTGCATTCTGGAGTGGATGGAAAGAAGTGAAACTTGCCCTGTCTGTGCTCAGGCCTTGGTTTTCAGCCCTCCCATTGAATAG | 621 | 0.438 | MGGCCCCASKETVLSAPPAYYFQYPRASDEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYTPPPAPIPFNVTFDATQTAPVVQEISCDKNNTNSNSVQEPSGDNHGTSPKSEELKESECKGQTDLELDSAKDSEIELPKLGEPINLVEEEDGCPICLEEYDAENPKLTTKCEHHYHLACILEWMERSETCPVCAQALVFSPPIE* | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g0717 | 206 | SUPERFAMILY | RING/U-box | 149 | 202 | - | - | |
| Psa7g0717 | 206 | SMART | ring_2 | 155 | 195 | IPR001841 | - | |
| Psa7g0717 | 206 | MobiDBLite | consensus disorder prediction | 108 | 136 | - | - | |
| Psa7g0717 | 206 | MobiDBLite | consensus disorder prediction | 92 | 136 | - | - | |
| Psa7g0717 | 206 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 206 | - | - | |
| Psa7g0717 | 206 | MobiDBLite | consensus disorder prediction | 92 | 107 | - | - | |
| Psa7g0717 | 206 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 200 | IPR013083 | - | |
| Psa7g0717 | 206 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 195 | IPR001841 | - | |
| Psa7g0717 | 206 | Pfam | Ring finger domain | 155 | 195 | IPR001841 | - | |
| Psa7g0717 | 206 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 206 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g0717 | Psa-Chr7 | 51000851 | 51004885 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g0717 | 1 | 201 | C3H Transcription Factor Family | AT5G41350 | 49.763 | 1.02e-60 | 187 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g0717 | - | - | gmx:100816369 | 332.413 |