Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0600 ATGGCGGATTCTACCGTTGCTGAAATTCCGACGAAGAAATCAAGAGGATCCAGAAAGGCTCTCAAGGAGAAAAACCCATCCGCCAGTGATGCCAATATCATAGCTGGGGAATCAAAGGGAAAACCTGCATCAAAGAAACAACAACAGCCAAAGCAACAATCGTTCGAGCAAGACTTGCTGGAGATGCAGGAGAAACTGCAGCAGTTGCGTCTTGAGAAGGAGAAGACGGACGAACTCTTGAAAGCCAAAGACGAGATCCTGAAGCAAAAGGATGAAGAACTCGAAAATCGTGGAAAAGAGCATGAGAAACTTCAGATTGAACTTAAGAAATTGCAGAAGTTGAAGGAATTCAAACCTACCATGAATTTGCCTATGGTGAAAGATAAGGAACAAGAGAAGAAGGACAAGAAGAAGAAGAATGGATGCTCTGAGACAAAAAGGCCTACTCATGCCTACACGTTATGGGTCAAAGACCAATGGCATGAGGTAAAGAAGGCTAATCCCGAGGCCGAGTTTAAGGACATATCGAACATTCTTGGTGCGAAATGGAAAAATACAGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAAAAATACCTTGCAGAAAAAGAAGCTTATTTGCAGGTAATTACAAAGGAAAAACGTGAGACTGAGGCAATGAAGCTCTTGGAAGAAGAGCAGAAGCATAAGACTGCTATGGAATTGCTTGAACAGTATATGCAATTCAAACAAGAGACAGAGAAAGAGAACAAGAAGAAGAACAAGAAGAAAGAGAAGGATTCATTGAAACCAAAACATCCCATGTCAGCTTATTTCTTGTTTACAAATGATAGAAGAGCGGCTATTCTTGCAGAAAACAAGGGTGTCTTGGAGGTTGCAAAGATCACAGATTGCAAAGAAGAACAAGGAGAAAAGAAGAAGCAAAATAAGGAGTCTGATCCAAACAGGCCCAAGAGACCTGCTTCCTCTTATTTTCTTTTCAGCAAAGAAGCAAGGAAGAGTGTACTGGCGGAACGTCCAGAAGTGGGAGAAGGCATGCTCAGAGCTCTAGTTTCATTGAGGTGGAAGGATATGAGTGAGGAAGATAAACAATTGTGGAGTGGCAAAGCTTCTGAGGCAATGGATGCATACAAGAAGGAAATGGAGGAGTACAACAAATCTCTTGTTGCAAAGTTGGTGGAGAAAAACACCGATGAATGA 1200 0.42 MADSTVAEIPTKKSRGSRKALKEKNPSASDANIIAGESKGKPASKKQQQPKQQSFEQDLLEMQEKLQQLRLEKEKTDELLKAKDEILKQKDEELENRGKEHEKLQIELKKLQKLKEFKPTMNLPMVKDKEQEKKDKKKKNGCSETKRPTHAYTLWVKDQWHEVKKANPEAEFKDISNILGAKWKNTVSAEEKKPYEEKYLAEKEAYLQVITKEKRETEAMKLLEEEQKHKTAMELLEQYMQFKQETEKENKKKNKKKEKDSLKPKHPMSAYFLFTNDRRAAILAENKGVLEVAKITDCKEEQGEKKKQNKESDPNRPKRPASSYFLFSKEARKSVLAERPEVGEGMLRALVSLRWKDMSEEDKQLWSGKASEAMDAYKKEMEEYNKSLVAKLVEKNTDE* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0600 399 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 145 214 IPR009071 -
Psa7g0600 399 Gene3D High mobility group box domain 244 299 IPR036910 -
Psa7g0600 399 Pfam HMG (high mobility group) box 317 385 IPR009071 -
Psa7g0600 399 Pfam HMG (high mobility group) box 145 208 IPR009071 -
Psa7g0600 399 Coils Coil 52 114 - -
Psa7g0600 399 MobiDBLite consensus disorder prediction 119 145 - -
Psa7g0600 399 MobiDBLite consensus disorder prediction 1 56 - -
Psa7g0600 399 MobiDBLite consensus disorder prediction 240 264 - -
Psa7g0600 399 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 8 296 - -
Psa7g0600 399 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 297 391 - -
Psa7g0600 399 SMART hmgende2 316 386 IPR009071 -
Psa7g0600 399 SMART hmgende2 263 314 IPR009071 -
Psa7g0600 399 SMART hmgende2 144 215 IPR009071 -
Psa7g0600 399 MobiDBLite consensus disorder prediction 42 56 - -
Psa7g0600 399 SUPERFAMILY HMG-box 132 208 IPR036910 -
Psa7g0600 399 MobiDBLite consensus disorder prediction 295 317 - -
Psa7g0600 399 Coils Coil 232 263 - -
Psa7g0600 399 Gene3D High mobility group box domain 300 397 IPR036910 -
Psa7g0600 399 Gene3D High mobility group box domain 128 212 IPR036910 -
Psa7g0600 399 CDD HMGB-UBF_HMG-box 317 382 - -
Psa7g0600 399 Coils Coil 374 394 - -
Psa7g0600 399 MobiDBLite consensus disorder prediction 119 147 - -
Psa7g0600 399 MobiDBLite consensus disorder prediction 241 264 - -
Psa7g0600 399 MobiDBLite consensus disorder prediction 295 323 - -
Psa7g0600 399 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 8 296 IPR044601 GO:0003677
Psa7g0600 399 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 297 391 IPR044601 GO:0003677
Psa7g0600 399 SUPERFAMILY HMG-box 251 295 IPR036910 -
Psa7g0600 399 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 317 385 IPR009071 -
Psa7g0600 399 SUPERFAMILY HMG-box 310 388 IPR036910 -
Psa7g0600 399 CDD HMGB-UBF_HMG-box 146 210 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa7g0600 HMG_box 4.4e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0600 K09273 - gmx:100783033 353.599