Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0564 ATGGCTACCTCAACTCTAACACCTCTTCTATTTTACATCTTCATTATTTTCCACTTTCAAACTTCCAAAGCCAAACAAACAATCTGCAAAACCTTATCATGCGGTGATATCGATATCACTTTTCCTTTCGGTTTAAAACAAAGTAATAATCAAATTCAAGATCCTCGTTGTAGCTATTATCCAAATCCCACTTTCCAACTTTCATGCAACAAAAACCAAACACAAACAATCCTCAACCTCCCCGAAACAGACACGTTAATCATCAACAACATCGATTACAAATCCCAAACAATCCAAGTCAACGACCCCAAAGGTTGTCTCCCAAACCGTTACTTACAAAACAACTTCAACCTTTCCGGTTCACCTTTTAAACTAAACCCAGAAATTTACAGCATGTATAATCTCACTTTTCTTCGTTGTCCTTCCAACGTGTCATCTGAGTTGCCTTTAACACCGATTTCATGTCTAAGCGACGAAGAAGAACATGATTCGGACATGTCGGTTGTTGTTTCATGGGGACAACCTATTGAGGATACAACGTTGTCGGAAACATGTGAGGTGATTTCAAAGGTTTTTGTTCCGTTACGGTGGATGGATTTGACTATGTGGCCGTTTTGGCCTGATCTTAGTAGTGATGTTGAGTTGGTGTGGAACAAACCTAGATGTGAGAAATGTGCACTTAGTGGTCAAGTTTGTGGATTTTCAGATGATGAGAAAAATGATCTTCAAGTTGAATGCTTCACTAGTTCTTCCAATGGAGGTTTGTCTACAAGTGCCAAATACTGCATATCAATAGGACTTGGAATACCAGGACTTCTGAGTCTAATTGTAATTTTGAGTTTTATATGTCGTAAGATGAGAACAATTCCACCTCATAATCCAAGGACTTCAAATCATCCTACAATAACAATTTCCTTAGAATCAGTCCCTTCTTTTGTAACTGGCCTTGATGGTGCCACAATTGAAAAGTATCCCAAAATTCTTATTGGAGAGAGTGGACGTTTATTGAAGCCTAGTGATAATACTTGCTCAATTTGCTTATCTGAATATGAACCTAAAGAGACATTGAGAAGTATTCCTGAATGCAATCATTATTTTCATGCTGCTTGTATTGACGAGTGGCTCAAAATGAATGCTACTTGCCCTATATGTAGGAATTCACCACAAGTATATTCTTCTATTTCTCCTTATTTTTCTTCATTATTGTTATCACCAAACTCAACATCTTTGACATCTTCACGATAA 1245 0.3743 MATSTLTPLLFYIFIIFHFQTSKAKQTICKTLSCGDIDITFPFGLKQSNNQIQDPRCSYYPNPTFQLSCNKNQTQTILNLPETDTLIINNIDYKSQTIQVNDPKGCLPNRYLQNNFNLSGSPFKLNPEIYSMYNLTFLRCPSNVSSELPLTPISCLSDEEEHDSDMSVVVSWGQPIEDTTLSETCEVISKVFVPLRWMDLTMWPFWPDLSSDVELVWNKPRCEKCALSGQVCGFSDDEKNDLQVECFTSSSNGGLSTSAKYCISIGLGIPGLLSLIVILSFICRKMRTIPPHNPRTSNHPTITISLESVPSFVTGLDGATIEKYPKILIGESGRLLKPSDNTCSICLSEYEPKETLRSIPECNHYFHAACIDEWLKMNATCPICRNSPQVYSSISPYFSSLLLSPNSTSLTSSR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0564 414 Pfam Wall-associated receptor kinase galacturonan-binding 29 102 IPR025287 GO:0030247
Psa7g0564 414 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 414 - -
Psa7g0564 414 SUPERFAMILY RING/U-box 335 393 - -
Psa7g0564 414 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 414 - -
Psa7g0564 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 389 IPR013083 -
Psa7g0564 414 Pfam Ring finger domain 341 385 IPR001841 -
Psa7g0564 414 SMART ring_2 343 384 IPR001841 -
Psa7g0564 414 CDD RING-H2_PA-TM-RING 342 385 - -
Psa7g0564 414 ProSiteProfiles Zinc finger RING-type profile. 343 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0564 Psa-Chr7 37891951 37896710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0564 24 388 C3H Transcription Factor Family AT2G25410 34.392 5.25e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0564 - - cam:101497311 510.76