Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0563 ATGGGTCTGGCAATACCTGCACTTCTAGGTATTATTGTTCTTACATGGATGCTATGGAACAATAAGAACACAAGAAATCAAGCACAACAACAACGTGAAACAGGAACTGAATTTTCAACTATGGTTATGCCTCACCCTCCGGTTCTTGTTATGGGCCTTGATATGGCAACAATTGATAGATATCCTAAAACTCAGCTTGGTGAAAGTGGAAGATTGCCTAGGCCTAATGACAATGTATGCTCTATATGTCTTTGTGAGTATCAACCAAATGAAGTGTTGAGGACTATTCCTGAGTGTAATCACTATTTTCATGCTAACTGTATAGATGGATGGCTCAAAACAAATGCTACTTGCCCTTTGTGTAGAAATTTTCCAGAGATGTCTAGTTTCTTTGCTTCGGTTTTGCCTGTATCTCCAACTTCGTAA 426 0.3897 MGLAIPALLGIIVLTWMLWNNKNTRNQAQQQRETGTEFSTMVMPHPPVLVMGLDMATIDRYPKTQLGESGRLPRPNDNVCSICLCEYQPNEVLRTIPECNHYFHANCIDGWLKTNATCPLCRNFPEMSSFFASVLPVSPTS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0563 141 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 1 132 - -
Psa7g0563 141 SUPERFAMILY RING/U-box 74 124 - -
Psa7g0563 141 SMART ring_2 80 121 IPR001841 -
Psa7g0563 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 126 IPR013083 -
Psa7g0563 141 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 132 - -
Psa7g0563 141 ProSiteProfiles Zinc finger RING-type profile. 80 122 IPR001841 -
Psa7g0563 141 Pfam Ring finger domain 79 122 IPR001841 -
Psa7g0563 141 CDD RING-H2_PA-TM-RING 79 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0563 Psa-Chr7 37886028 37886453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0563 2 130 C3H Transcription Factor Family AT5G07040 44.615 1.88e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0563 - - mtr:MTR_8g099495 243.047