Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0543 ATGAAATTAAGTACTGAGTTAATAGTCGGTCATGTTGTTAACATCGTTGTTGTTCTTAGACTTAATTTGGTTTCCGCTGGATCGGGCGTTGCTTTTGATGTTGCCATGGGAGACTTTATCAAGTACAATGCAGAGTCAAATGTTGCTCATGCTAACCTTATTGCATCTCTAATTCTCAAGACCAGAGATTCAGGTTCAACAGGCTGTACTGGCACCTTTGAACAACATTCCCGCTCCGAACGCAAATATTTTATCAAGAATTTGGACAAGACAATTGATTCCAAGGCTTTGTATGACACTTTTTCTACTGTTGGACATATTCTGTTTTGCAAAATGGCTACCGTTGGTTCTGGCCAGTCTAAAGGTTTTGGCTTTGGCCAATTTGAGAATGCTGAACCTGCAAAGAATGAAATTGATAAGTTAAACGGAATGCTGATCAATGATAAACGGTTACACGATCTCACGTCGATGCCGGTTTAA 480 0.3979 MKLSTELIVGHVVNIVVVLRLNLVSAGSGVAFDVAMGDFIKYNAESNVAHANLIASLILKTRDSGSTGCTGTFEQHSRSERKYFIKNLDKTIDSKALYDTFSTVGHILFCKMATVGSGQSKGFGFGQFENAEPAKNEIDKLNGMLINDKRLHDLTSMPV* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0543 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 151 IPR000504 GO:0003723
Psa7g0543 159 Gene3D - 77 131 IPR012677 -
Psa7g0543 159 PANTHER POLYADENYLATE-BINDING PROTEIN 82 153 - -
Psa7g0543 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 152 IPR000504 GO:0003723
Psa7g0543 159 SUPERFAMILY RNA-binding domain, RBD 75 152 IPR035979 GO:0003676
Psa7g0543 159 PANTHER RNA BINDING PROTEIN 82 153 - -
Psa7g0543 159 Gene3D - 74 151 IPR012677 -
Psa7g0543 159 SMART rrm1_1 82 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0543 Psa-Chr7 36938105 36938584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0543 84 152 Eukaryotic Initiation Factors Gene Family AT4G34110 60.870 2.19e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0543 K13126 - oeu:111394186 101.293