Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0530 ATGGAATCAGATTTCGAGACGAACGATACTTTTACACTGTCACAGGATCCATTTGATGCCAACGACAATGATAATTTGGATGCTGAAGGGGAGAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTATTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGTATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACCTGTGTTCCAGTATATGACACCATAGGGAGCAATAAAGTCGAAGATGGCTCATTCTTCAGAGATGATGACTGGTCGATTGATGGGAAGAATAACAGTTTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTACTTGCTTGGATGGCGATGGATGCAAAATTCGAAATGGATTGGCAAGTATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATCTATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGAAAGTACATGGTTATGCCCACGATGCGAGGTTGATGAAGTTTCTAAAGAAACAGATACCAGTTCAATAAAGGAGGCAACCCTGGAGTGTAACCCAGATAATAATAACAGCGAATGTCATGCTGAGGATTCCTTTTCAGGAATAGTGTCTGTTTCCATTGCTGATACTGGGGAGACAGCTGTTGTTGTCTCAATGGTTGACCGAAACAAATGGGTTCCAGAAACAAACGAGAGAGGCCTTTGTCCTCCTGAAGTTGATGGGGATCGGTTGACTGAATCATGTAGTTTAATGTCTGATACTAATAATCAGCCGCAGGCAGCAGAGAAGACAACTTTGTCACCAATCATGAAGGTAGAAGAACTAGAGCTGTCCTTATCACACTCAACTTCTAAATCCTCCATGCATAATGATTTAAAGAAAATAGATAATGGAACAAGATGTGAGCTGAGTAGCTTTGATGGAACCAAGTTATTTGATGAGTCCCATGCCAAAACTAGTCCATGCAAAACTGAATCTGATATGGGTCTTCATCTGGGTTTATCGGTGGGCTCTTTTATAACTGTCAATGATGTGGACACGAGCAAAACAAAAGATCAAGCAACTGATGCCCTGTGCTCGAGTCCTGAAATTTTTCCTTTGAAAGGAGATGAAATGGAAATCAATGCTTGTGAGGACAGTGACAGGGTGGCTGGTAGAAAGAGGAAGCATTTTGATTACAGTCATGAGCAAGTTCATACAAAAGCTGATGATGAAGACGCCAAGCCCGAACTATTGGTTGAAGCTTCACAAAAGAAAATTAGAGCAGCCGATAGTCAAATTATTAGTGCTAATGACTTGGCTGACGCTCAACTTTCTGACAATGCTAAGAAAAGTCCTGCTATAAAACGTTCTCCAACAAAGGAGATTGCGGCATCCGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTAGCTGACACTAATGCGAGTGAAAAGTTAGCTGAAAAGAAAGGAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAAAGAGTTTCTGATGATGGAGAATCATCCTCAGTTGTCCAAAATCTAAGGAAGGAAATTAGAGAGGCTGTCCGCAACAAATCCTCTATAAACTTTGAGGACAACCGTTTTGATAAAAATCTTCTTGAAGCTTTCAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCACCTACAGCTCTGAAGGCAAAGAAGTCAATGTTACAGAAAGGGAAAGTACGGGAAAATCTAACCAGGAAAATTTTCGCGACATCCAATGGAAGGAGAAAGCGGGCATGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTTCAAAGCCTGAAAAGGTCGAAACTTTACAATCAGTTCTCGATCTTTTAAGAAAAAGTTCAGAGAATCCAGAATCAGAGCAAACACCCAGCTGTCAGGCCAAGAATCCAATTCTTTCCAGATTGTATATAGCAGATACATCTGTTTTCCCACGGAAACAGGATGTCAAACCTTTCTCAGAGCAAACTAAACTAAATAACCCATCTGCAAAAGGAACAAATCAATCTGTTGATAACAAGACTATTAAAGCAACAGAGGTAAATTATCTCTTATCAAAGACCAGAGTTTGTTCATCTGAGAAAAAAGTAGATAAGAAGATTGTACGTGGTCCAGTTGGTAAAGTACATTCAAGCAGTCACTCAGAAGGAACATCGGTTTCATCTTCAGCCAGTGCCAACGTTGGCACAAAGGAGTCAGGCCTTAAATCTGATTCTGTAAAAGGTGATAAAAGAAAATGGGCTTTGGAGGTTCTTGCGAGGAAAACAGCTGTTGGAAGCAAGAGCACATCAAATGAAAGTCAGGAAGAAGATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTAATATGAGACCAGTGTTGGCACCTTGTCGCCACAATAAAATTCCTGTATCTGTGAGGCAGGCACAGCTTTACCGCCTGACGGAACGCTTATTGAAGAACGCAAATCTGCCAATCATTCGCAGAACTGCAGACACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAACCAGTGTATCTGAATCTTTGTTCACAAGAGCTATTGCATCGCACAAATAACAAAAAATCAAATGCAGACACTGACAAGACTCCACCAACCTCGTCACCAGTGCATACTGATCAACCAGAACTAAATACTGATGATATGTCGACTGACCCTGACGTTCAAATAGCGTTGAAAAATGCTGGTCTGTTGTCTGATTCGCCACCAAGCAGTCCATATAAGGATAATGAAATATGTAATGAAAATGAAGTGTCAGGGCCCAATGATATACTTGAACTAGATTCTAATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGATGATTACATATGTGCTAGTGTTACAAAGGTCCCAAATCTAAAACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTCTCCACAACGAGCTTGAAGAAAACAAATAATGATTTGGATTGTGCAGACTGTAAGGGGTCTGAAAACAATGAAGTGCCAGGAGATACCTCTTGCTCCCCAGATTGTCAAAGTGATGTAGTCCACAGGGATTCTACCAATGATGCAGAGATTGGCCATCCTTCGGTTTCTTCTGGGCTTCTACCATGTGAGGATAGTGTTGATCCAGCTGATTCAGAATTTGAAGAATTATATGGCCCTGATAAAGAACCACTTATAAAAAAGTTTCCAGATGGTGAATTACAATCAGTACATGGAGAGGGCAAGACTGAATTTCAAAGTGAGAATAGTAATTTCCATAAGGACGAAGAACATGTCTTAGACAAAGCAGTAAATGGTGCTGAATTAGGGAATGACAAATCTTCTAATATATCTGGGACTAATGAGAATATTCAAAGGAAGAAAGAGAAATCTGACATCCCTGCCCAACAGTCTAACAATGAAAATCCAATAGCAAAGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGCGTGATTACGGCGGAGCAGTACAGGTGGGCTGTTGCAAAAACAACCGAAAAGGTTATGAAATATCATTGCAAATCAAAGAATGCAAATTTCCTCATAAAGGAAGGTGAGAAGGTAAAGAAACTTGCAGAGCAGTATGTTGAAGCAGCCCAAGAGAATAGAAAAAATTGA 3792 0.4024 MESDFETNDTFTLSQDPFDANDNDNLDAEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSFFRDDDWSIDGKNNSLSFPSYYIDENAVTCLDGDGCKIRNGLASIEEDSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRCEVDEVSKETDTSSIKEATLECNPDNNNSECHAEDSFSGIVSVSIADTGETAVVVSMVDRNKWVPETNERGLCPPEVDGDRLTESCSLMSDTNNQPQAAEKTTLSPIMKVEELELSLSHSTSKSSMHNDLKKIDNGTRCELSSFDGTKLFDESHAKTSPCKTESDMGLHLGLSVGSFITVNDVDTSKTKDQATDALCSSPEIFPLKGDEMEINACEDSDRVAGRKRKHFDYSHEQVHTKADDEDAKPELLVEASQKKIRAADSQIISANDLADAQLSDNAKKSPAIKRSPTKEIAASDIMNIVKGTNRRLSKGLADTNASEKLAEKKGNMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVRNKSSINFEDNRFDKNLLEAFRAAITGPKTELVNKLSPTALKAKKSMLQKGKVRENLTRKIFATSNGRRKRAWDRDCEIEFWKYRCMRASKPEKVETLQSVLDLLRKSSENPESEQTPSCQAKNPILSRLYIADTSVFPRKQDVKPFSEQTKLNNPSAKGTNQSVDNKTIKATEVNYLLSKTRVCSSEKKVDKKIVRGPVGKVHSSSHSEGTSVSSSASANVGTKESGLKSDSVKGDKRKWALEVLARKTAVGSKSTSNESQEEDAIFKGNYPLLAQLPTNMRPVLAPCRHNKIPVSVRQAQLYRLTERLLKNANLPIIRRTADTELAVADAINIEKEVADRSNSKPVYLNLCSQELLHRTNNKKSNADTDKTPPTSSPVHTDQPELNTDDMSTDPDVQIALKNAGLLSDSPPSSPYKDNEICNENEVSGPNDILELDSNPELDIYGDFEYDLEDDDYICASVTKVPNLKQEQSEPKVKLVFSTTSLKKTNNDLDCADCKGSENNEVPGDTSCSPDCQSDVVHRDSTNDAEIGHPSVSSGLLPCEDSVDPADSEFEELYGPDKEPLIKKFPDGELQSVHGEGKTEFQSENSNFHKDEEHVLDKAVNGAELGNDKSSNISGTNENIQRKKEKSDIPAQQSNNENPIAKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKSKNANFLIKEGEKVKKLAEQYVEAAQENRKN* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0530 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Psa7g0530 1263 SMART PHD_3 131 183 IPR001965 -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 740 778 - -
Psa7g0530 1263 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Psa7g0530 1263 SMART ring_2 33 71 IPR001841 -
Psa7g0530 1263 Pfam Ring finger domain 32 72 IPR001841 -
Psa7g0530 1263 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Psa7g0530 1263 Coils Coil 533 553 - -
Psa7g0530 1263 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Psa7g0530 1263 SUPERFAMILY RING/U-box 25 78 - -
Psa7g0530 1263 SUPERFAMILY FYVE/PHD zinc finger 148 189 IPR011011 -
Psa7g0530 1263 Coils Coil 1247 1263 - -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 749 772 - -
Psa7g0530 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 190 IPR013083 -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 1067 1110 - -
Psa7g0530 1263 Pfam PHD-finger 148 184 IPR019787 -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 689 710 - -
Psa7g0530 1263 PANTHER RING FINGER PROTEIN 41, 151 103 1259 - -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 692 710 - -
Psa7g0530 1263 PANTHER RING/U-BOX PROTEIN 103 1259 - -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 1152 1186 - -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 906 935 - -
Psa7g0530 1263 MobiDBLite consensus disorder prediction 912 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0530 Psa-Chr7 36057258 36068715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0530 33 84 C3H Transcription Factor Family AT3G58030 37.037 8.86e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa7g0530 PHD 4.2e-08 CL0390