LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g0495	ATGACAACGCAGGAAGAAGCTGATTCATCCACCCTCGCCGCATCTCCAGAAGTTGCAGGAGGAGAGAACAACGGTATAAACACTGAGCTATGGCAAGCTTGTGCTGGACCTCTTGTCAATCTCCCTTTACCTGGAACTCATGTCGTTTACTTCCCTCAAGGTCACAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGTGGATGTTCAAGTACCAAACTATTCCAATCTTCCATCGAAACTACCGTGTGTTCTTCATAGTCTCACATTACATGCAGATCCTGATACAGATGAAGTATACGCCCGGATGACGCTTCAGCCAGTGTCTTCGTTTGACATGGATGCCTTATTAAGATCAGATAATTCTCTCAAGTCGAGCAAGACGCAGCCAGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACAAGTACTCATGGAGGTTTCTCTGTACCTCGCCGTGCTGCAGAGAAGATTTTTCCCCCTCTCGATTTCTCTGCGCAACCTCCTGCTCAAGAACTCGTGGCAAAGGATTTGCATGGTAATGTCTGGAAATTCCGCCATATATACCGTGGACAACCGAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTATCAGCGGAAAAAGGCTTTTAGCTGGAGACTCAGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGGCAACCGACCAATTTGTCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTAGTGCAAACAATAGTCCGTTCACCGTGTTTTATAACCCTAGGGCGAGTCCCTCAGAGTTTGTTATTCCATTGGCCAAATACTACAGGGCAGTATACAGCCACCAAGTATCACCTGGCATGCGCTTTCGAATGATATTTGAAACAGAAGACTCGGCAACAAGAAGATATATGGGTACAGTTATAGGCGTCAGTGATCTGGATTCCGTGAGATGGAAAAACTCGCAGTGGCGTAATTTACAGGTTGGTTGGGATGAATCTGGTGCTGGGGAAAGACGGAGTAGGGTCTCAATCTGGGAAATTGAACCTGTTACTGCTCCATTTTTCCTTTGTCCGCCTCCATTCTTCCGATCCAAGAGACCAAGACAACCTGGAATGCCTGATGATGAGCTATTTGATTTCAGTAACCTTTTCAAGAGTACAATGCCTTGGCTTGGTGATGAAATGAGTATGAAGGATCCACAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGACCATACAGAAAAATCCTGCTCTGACGAGCTCGTTGCAATCGAATTATGTACCTTCTTTGTCTGGATCCGTTCTACACAATCTTCCCGGCACTGATATTGCTCATCAATTGGGACTTTCTACTCAACAAATCTCTCAGTCAAACAATGTAGCTCTCAATGCTCCAGTTCAGACTCCACCATCCGCATCTAGTGGATTGGGAACAGTCACGCAGCCTGAGCAGCAGTTGAGTAATATTACTCAACATTCTAGACAGAACTTGGCAAATCAAACTCTACCACAGAGTCAAGTTCAGACTCAACTTCTTAATCCTCGGACCCAAATGAACAATATTCTTCAATCACAACAACCATCCGTTCAAAACCATGAACTCCATAGAAGTTTCTCTCAGAACCAACTGCAGCAGCTTCAACAGATGTGTCAGAACCAACAGCCAAATATAATTCAATCCACTATGCCAGATCACAATAACCAACAGTTGCATATGTCTGATAATCAAGTTCGACTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAAACATTCTTGACTCAGCAATCTGCATTGCAGCAGCCTGCTCAATTTGTTCAAAACCAAGACCAGCAGAGACGACTTTTAGACGATCTAACACAGACACGCAACTCTAAGGCCCTAACTCCCGGTCAATTGTTTGAAATTCCTCCTTTGCTTCAAAACTCACTGCCCGAGGCTAATTCTATGATCCATCAGATTACAGATCATAGTAGCCAGAACAATGTTCAGTTCTCTCATCCATCCAAACAACCAAAGCTTCAACATCAACAACAGCAAACGCAACCCGGTTTTCTGTCTAAAACTTCGAGTCATGTTGGACTTCCTTCTGCTACTACAAATAATCAGTTATCTGCTTCTGGTTGTAGTATACGCACTGTAGCAACGGGAACTGCGCCATCTATCATTACTGATGATGTTCCATCTTGCTCCACTTCACCTTCCACAAATAACTGCGCCCGTGCACTTCCTCCAGCGACAGCATCCCATACCCTTATGAGCACAATAGGGAATGACATGGCTCAGTCTGCTGTGACAATCTTGAGTCAAAATTCTAATGCGAATGTGGTAAAATATGTACAGCCAAATTATCAAGTTAAGCCTGGTTTAAACATTTCCGAAAATCACAGCCAAGGAAATTTTTACCCTCAGACGTGCTTGAATGGTGGTGCTGTCCAGACAGATTGTTTGGATACGTCGTCTTCTACGACTTCAGTTTGCCTTTCTCAGAGCAATACACGCTTTCATCAAAACGAAAACCCGTTATCTTACAATCCACCGTCGATGTTCTGTAGAGACAACATTCGAAATGTGGAAATTCAGGCTGATGCTAGGTGCAATGTTTCATATGGCAACAGCATGAACGGGCAAATGAGAATGCCACTGAATCTAGATTCTAATGTAACCAAAGGCACAACAAGGTTAGGCAAGGATTTGTCAACTGATTTCTCTTCCGCAGGCTTGCTTGGAGATTATGAAAATAACAGCGATGCTCAGCCAGAACTTTCATCTTCCATGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTCAACTCAATCGATTCCACCATAAATGATAGTAGTTTCTTGAATACCGGTCCATGGGCTCCACCGCCGCCGCCACATCAGTTTCAACGAATTAGAACATATACCAAGGTATATAAACGCGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGTTACGAGGAGCTTAAACATGATCTCGCTCGTAGGTTTGGTATCGAGGGACAGCTGGAAGATCGACAACGGATAGGGTGGAAACTCGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAGTTGCGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACTAATGAGCATAGACGGAGATTTTGGCAATGGCGGTAGCCTTCCGAAACAGGCCGGTAGCAGCTCTGACGGCGGGAATGCTTAA	3300	0.4415	MTTQEEADSSTLAASPEVAGGENNGINTELWQACAGPLVNLPLPGTHVVYFPQGHSEQVAASLKKDVDVQVPNYSNLPSKLPCVLHSLTLHADPDTDEVYARMTLQPVSSFDMDALLRSDNSLKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQVSPGMRFRMIFETEDSATRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDESGAGERRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDELFDFSNLFKSTMPWLGDEMSMKDPQAFPGMSLAQWMTIQKNPALTSSLQSNYVPSLSGSVLHNLPGTDIAHQLGLSTQQISQSNNVALNAPVQTPPSASSGLGTVTQPEQQLSNITQHSRQNLANQTLPQSQVQTQLLNPRTQMNNILQSQQPSVQNHELHRSFSQNQLQQLQQMCQNQQPNIIQSTMPDHNNQQLHMSDNQVRLQLLQKLQQQQQTFLTQQSALQQPAQFVQNQDQQRRLLDDLTQTRNSKALTPGQLFEIPPLLQNSLPEANSMIHQITDHSSQNNVQFSHPSKQPKLQHQQQQTQPGFLSKTSSHVGLPSATTNNQLSASGCSIRTVATGTAPSIITDDVPSCSTSPSTNNCARALPPATASHTLMSTIGNDMAQSAVTILSQNSNANVVKYVQPNYQVKPGLNISENHSQGNFYPQTCLNGGAVQTDCLDTSSSTTSVCLSQSNTRFHQNENPLSYNPPSMFCRDNIRNVEIQADARCNVSYGNSMNGQMRMPLNLDSNVTKGTTRLGKDLSTDFSSAGLLGDYENNSDAQPELSSSMVSQTFGVPDMTFNSIDSTINDSSFLNTGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVSCVRCIKILSPQEVQLMSIDGDFGNGGSLPKQAGSSSDGGNA*	1100

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g0495	1099	MobiDBLite	consensus disorder prediction	675	703	-	-
	Psa7g0495	1099	SUPERFAMILY	DNA-binding pseudobarrel domain	124	262	IPR015300	-
	Psa7g0495	1099	MobiDBLite	consensus disorder prediction	1	20	-	-
	Psa7g0495	1099	Pfam	AUX/IAA family	987	1070	IPR033389	-
	Psa7g0495	1099	Gene3D	-	981	1075	-	-
	Psa7g0495	1099	PANTHER	AUXIN RESPONSE FACTOR	19	1092	-	-
	Psa7g0495	1099	Pfam	B3 DNA binding domain	133	234	IPR003340	GO:0003677
	Psa7g0495	1099	Gene3D	-	131	234	IPR015300	-
	Psa7g0495	1099	SMART	B3_2	133	235	IPR003340	GO:0003677
	Psa7g0495	1099	Pfam	Auxin response factor	259	342	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g0495	Psa-Chr7	33614167	33620010	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g0495	16	475	B3 DNA Binding Superfamily	AT1G19220	69.114	0.0	632

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Psa7g0495		B3	9.4e-21	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g0495	-		-	ccaj:109803454	1482.62

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa7g0495	7	33614167	33620010	Psa7g0495	7	33614167	33620010	ECH

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