Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0485 ATGGAGGCTCTTTTATATGTTTGTGTGGCCTTCATGTTGTGTGGTTATACTGCTGCAAGAGAATGCACAAACAATCCTACTCAATCACATACATTGCAATATGAATTAGGGACATCAAAGAATGAGACATGGGAGAAAGAAGTGATGTCTCACTATCATGTAACGCAAACCGAGGATTCAGCCTGGGCAGATTTGCTATCGAGGAAGTTGTCAGCAGAAGAGCACCAACATAATTGGACTGTTATGTATCGGAAAGTTAAGAATTCGGTTGTGTTTAAGCCACCTGTTGGTTTTCTCAAAGGAGTTCCTCTTGAGGATGGTTATGTTCATGTTGATGTTGCTGAAAGACGAACCAAGGGAATCAAGAATTTCTCTCTGAGAAAACCAGCGGTCATTGAAGTCTCCGGTAATGCGGCATATAGAACTTCTGATTCTACGAGTCATGCTAATATCATTGGCATTAAAGTGCAAAAATCAGAGAAGTTTTTGTATAAAGAACTAGCTAATGCTACTGACATGTTGGACTTTCCTGAAGTTCCTAAGGCATCTGTCCAGCCAAGTGCAAATTTTGCCACAGCTCTTGATAGGGAACACGATGAGCCAACAGTTTACAGAGATGAACCACATACCTCATTTGATAAAGTGGAAGTAAAGAAGTGGGTTGATCCTGAAGCATCACTTAATGAAAAAAGCATCAGATGGTATATCTTCAAAGTGTTGTCAAAAGTCAAGGAAACCGAACCTAAGAAAGATTCCGAACCACGAAACCTTGTTTCCCATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGTTGAAGGAGAAGAATGGTTCGAGCCGATACGCGATTGTGAAATTCATTAAAGAGAAACAGAAACAGCTTCCTGGAAACTTCAAACATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGTTGAAGGAGAAGAATGGTTCGAGCCGATACGCGATTGTGAAATTCATTAAAGAGAAACAGAAACAGCTTCCTGGAAACTTCAAGAAACTATTGCTCCAAAATTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTGCAGCAGCTAAGAAGCCAGCAATTGCCAAGCCAAAGTCAAAACCAGGTCGACCCTATATGTTTAGGGTTCATGATTTTGATGATGTTGTTTTCCTTTACGTGCTTTTAGTGTTGAGTTTGGTTTGTGATAGGAGTAACGGTTCAGGTTTAATATGTGAGTTTGTTTTGTGTCGAGTGAGGGAGGAGATGAATGTCTCAAGCAGAGAAGAGGATTTGAGGAGGAAGTGA 1335 0.4022 MEALLYVCVAFMLCGYTAARECTNNPTQSHTLQYELGTSKNETWEKEVMSHYHVTQTEDSAWADLLSRKLSAEEHQHNWTVMYRKVKNSVVFKPPVGFLKGVPLEDGYVHVDVAERRTKGIKNFSLRKPAVIEVSGNAAYRTSDSTSHANIIGIKVQKSEKFLYKELANATDMLDFPEVPKASVQPSANFATALDREHDEPTVYRDEPHTSFDKVEVKKWVDPEASLNEKSIRWYIFKVLSKVKETEPKKDSEPRNLVSHPTYEEMIKDAIVSLKEKNGSSRYAIVKFIKEKQKQLPGNFKHPTYEEMIKDAIVSLKEKNGSSRYAIVKFIKEKQKQLPGNFKKLLLQNLKKNVASGKLVKVKGSFKLSAAAKKPAIAKPKSKPGRPYMFRVHDFDDVVFLYVLLVLSLVCDRSNGSGLICEFVLCRVREEMNVSSREEDLRRK* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0485 444 SMART h15plus2 301 365 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0485 444 SMART h15plus2 257 299 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0485 444 Gene3D - 301 383 IPR036388 -
Psa7g0485 444 Gene3D - 256 300 IPR036388 -
Psa7g0485 444 SUPERFAMILY "Winged helix" DNA-binding domain 299 376 IPR036390 -
Psa7g0485 444 PANTHER HISTONE H1 302 384 - -
Psa7g0485 444 PANTHER HISTONE H1 241 301 - -
Psa7g0485 444 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 259 300 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0485 444 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 302 384 - -
Psa7g0485 444 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 241 301 - -
Psa7g0485 444 SUPERFAMILY "Winged helix" DNA-binding domain 254 300 IPR036390 -
Psa7g0485 444 CDD H15 302 369 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0485 444 PRINTS Histone H5 signature 246 267 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa7g0485 444 PRINTS Histone H5 signature 273 290 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa7g0485 444 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 301 370 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0485 444 Pfam linker histone H1 and H5 family 302 369 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0485 444 Pfam linker histone H1 and H5 family 260 295 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0485 Psa-Chr7 32872493 32876741 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0485 303 381 Single Myb Histone (SMH) Gene Family AT1G17520 36.585 2.16e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0485 K09955 K11275 gmx:100783150 148.673