Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0437 ATGACTGAGATGGTGCAAAGTAAATATTTATCTTTATCCAAATCCAAAACATCTTCCATCACTATGTCGATGATGATGTTAGGGGAATCACCCCATCGTACTAATCCAACCATACACGTGGCACCGTCACCATGGCCATCGATGATGAATCCAACGGCGGAGATAAATTATTCTCAGTTCTACTTAGAAGAAGCGCTGAACGCTCTTCAACACTATGTTCCGTCATCATCCATGGAAGATGAAGACGATTCCGACTCGGAGATTTTTCCGAGTCATGAATCTGTGGATGCGTATACGAATGACCATTTCCGTATGTTTGAGTTCAAGATTCGGAGATGCGCACGTGGTAGGTCACATGATTGGACAGAGTGTCCTTTCGCTCATCCCGGCGAGAAGGCCCGCCGTCGTGACCCGAGGAAGTTTCAATACTCCGGGACTTCGTGTCCGGAGTTTCGTAAAGGAAGTTGCAAGAAAGGTGATTCGTGTGAGTTCGCGCATGGTGTTTTTGAGTGCTGGCTTCATCCGTCTCGTTACCGAACTCAGCCATGCAAAGACGGAACCAGTTGCCGGCGACGTGTTTGCTTCTTTGCTCACACGACTGAACAACTCAGGGCTCCGACGACTCTACAGAGTCCGTTGAGTGTCGAGTCTTATGACGGTTCTCCTCTCCGGCTTGCCATTGAATCCTCCTGTGTTAAAAAGCTTCGGTTTTTGTCTTCTCCCGATTCCATTTCTCCGCCGGTGGAGTCTCCTCCGGGTTCTGTGAATGAGATGGTGGCTTCTCTGCGTAATTTGCATCTTGGGAAGATGAAATCTTTACCTTCTTCATGGAATGTTCAAATGGGTTCTCCTCGGTTCGGATCCCCGAGAGGACCCATGATCCGACCCGGTTTCTGTAGCTTACCAACGACGCCCACACAGCCGCCAAATCGCGGCGGGGTTAACCATTTTGATCTCTGGGATCAGAGCTGTGAAGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGGGATATAAGGGTGAAGATGTTTGAGAAACTGAGCAAAGAGAACTCTTTTGATGGATCCGGGTCGGGTAATGTTGGCGGGGCTCCGGATATTGGGTGGGTTTCGGAGCTTGTGTGA 1125 0.4951 MTEMVQSKYLSLSKSKTSSITMSMMMLGESPHRTNPTIHVAPSPWPSMMNPTAEINYSQFYLEEALNALQHYVPSSSMEDEDDSDSEIFPSHESVDAYTNDHFRMFEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFQYSGTSCPEFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTTEQLRAPTTLQSPLSVESYDGSPLRLAIESSCVKKLRFLSSPDSISPPVESPPGSVNEMVASLRNLHLGKMKSLPSSWNVQMGSPRFGSPRGPMIRPGFCSLPTTPTQPPNRGGVNHFDLWDQSCEEEPVMERVESGRDIRVKMFEKLSKENSFDGSGSGNVGGAPDIGWVSELV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0437 374 Gene3D - 141 206 - -
Psa7g0437 374 ProSiteProfiles Zinc finger C3H1-type profile. 142 169 IPR000571 GO:0046872
Psa7g0437 374 SMART c3hfinal6 142 168 IPR000571 GO:0046872
Psa7g0437 374 SMART c3hfinal6 177 200 IPR000571 GO:0046872
Psa7g0437 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 167 IPR000571 GO:0046872
Psa7g0437 374 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 33 374 - -
Psa7g0437 374 PANTHER UNKEMPT FAMILY MEMBER 33 374 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0437 Psa-Chr7 30333096 30335783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0437 98 226 C2H2 Transcription Factor Family AT5G12850 63.433 6.52e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa7g0437 zf-CCCH 6.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0437 - - gmx:100808676 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0437 7 30333096 30335783 Psa7g0437 7 30333096 30335783 ECH