Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0416 ATGATCAAAAACATCATTCAAACTTTCCTCCACCTCCTTCTCCTCCTCCTCCTCCTCCTCCCAAATCCATCAAAAGCTTCCATTGGTATAGGCATTGGTGTTGGCATTGGCATAGGCAAAGGCAATGACAATGGCAATGGATCATCTAAGCAAAATCTGAACAATGCTTACAAAGCTCTTCAAGCTTGGAAATCTTCAATTACCAATGACCCTTTAAATATTCTAGACACATGGGTTGGTCCTAATGTTTGTTCTTACAAAGGAATCTTCTGTGAATCTTCTACTACTAGTTATGTTGTTGCAGGCATAGATCTCAACCATGCAAACCTTCAAGGAACACTTGTCAAGGAACTCTCATTACTATCCGATATAACACTTCTTCATCTCAACACTAACAACTTTTCCGGCACAGTTCCTGAAACATTCAAAGACTTTACCTTCCTTCAAGAACTAGACCTCAGCAACAACCAACTTTCAGGTTCTTTTCCGACAGTTACCTTAAACATGCCAAGCTTAATTTACCTAGACCTTAGATTCAACAGCTTCAAAGGGTCACTTCCTGAAGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAATCAATTCAGCGGCGAAATACCTCAAAGCTTCGGTAACTCACCTGCATCAGTGATCAATTTAGCTAACAACAAATTAACCGGAAACATACCTGCAAGTTTTGGTTTCCTGAGTCCTAAACTAAAAGAGATTATATTTCTTAACAATCAATTATCTGGTTGTATTCCACAAGGTGTTGGTGTGTTCACAGAAATGCAGGTTCTTGATCTGAGTTTCAATTCTCTTGTGGGCCATTTACCAGATTCAATATCTTGTTTGCAAGATATAGAAGTTCTTAATCTAGGACATAACAAGCTTTCTGGTGATATATCCGATGTGATATGTTCTTTGAAAAGGTTGTTGAATTTAACTGTTGCTTATAATTTTTTTTCTGGGTTTAGTCAAGAATGTTCTAGGCTTTTCAATATTGGTTTTGATTTCTCGGATAATTGTATACCTGGTAGGAATTTGCAGAGACCTGAACCTGAGTGTTCTTTGATTCCTGGTGGTGATTTGAATTGTCTTAGAATTCCTAGTCCAAAACCTCTTGTTTGTGCTACTTTGGCTTCAAGTATTGATTCATCATCACCTTGA 1179 0.3783 MIKNIIQTFLHLLLLLLLLLPNPSKASIGIGIGVGIGIGKGNDNGNGSSKQNLNNAYKALQAWKSSITNDPLNILDTWVGPNVCSYKGIFCESSTTSYVVAGIDLNHANLQGTLVKELSLLSDITLLHLNTNNFSGTVPETFKDFTFLQELDLSNNQLSGSFPTVTLNMPSLIYLDLRFNSFKGSLPEELFNKKLDAIFLNNNQFSGEIPQSFGNSPASVINLANNKLTGNIPASFGFLSPKLKEIIFLNNQLSGCIPQGVGVFTEMQVLDLSFNSLVGHLPDSISCLQDIEVLNLGHNKLSGDISDVICSLKRLLNLTVAYNFFSGFSQECSRLFNIGFDFSDNCIPGRNLQRPEPECSLIPGGDLNCLRIPSPKPLVCATLASSIDSSSP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0416 392 Pfam Leucine rich repeat N-terminal domain 54 91 IPR013210 -
Psa7g0416 392 Gene3D Ribonuclease Inhibitor 54 219 IPR032675 -
Psa7g0416 392 PRINTS Leucine-rich repeat signature 148 161 - -
Psa7g0416 392 PRINTS Leucine-rich repeat signature 288 301 - -
Psa7g0416 392 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 386 - -
Psa7g0416 392 SUPERFAMILY L domain-like 56 337 - -
Psa7g0416 392 Pfam Leucine rich repeat 125 181 IPR001611 GO:0005515
Psa7g0416 392 Gene3D Ribonuclease Inhibitor 220 361 IPR032675 -
Psa7g0416 392 PANTHER EXTENSIN-LIKE PROTEIN 10 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0416 Psa-Chr7 28717626 28719473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0416 52 360 Leucine-rich Repeat extension Gene Families AT3G24480 51.603 8.03e-105 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0416 - - gmx:100820611 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0416 7 28717626 28719473 Psa7g0416 7 28717626 28719473 ECH