Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g0390 | ATGAGTAGAAATTCAAAACCCCCTTCCCTCTCGAGTGAAAATTGGATTAAAAATATGACTATAAAAAGGAGAAAAAAAGACCTTAAAATTAAATCATTTTCAACTAAAAAAACTAGAGAGAAAAAGAAAATGGCGCAGTTTCCTTGCGACTCCAATGGCGTTTGCATGGTATGCAAACAGAAGCCTCTAGAAACCGAAACTCTCTATTGCACAACATGCATAACTCCGTGGCATTTTACATGTTTACCCCTCGCTCCCACCTCTATCGCCGGTTGGGAATGCCCTGATTGTTCTCAACCCAACCTCACCGCCGATTCGCTTGCTCCGTCCATCGCCGGCGATCTCGTTTCCTCAATTCGCGCCATCGAGAACGATCCGTCGCTTACCGATGAAGAAAAAGCGAAGAAACGCCAAGAACTCGTTGGTGGATCTTCTACTGAAACTGAAACCATCAATAGAGGCTGCAATGATTTTCTTGATATCTTCGATGGGAGTCTCAATTGCTCCGTTTGCATGCAGTTATTGGAAAGACCCGTTACTACTCCGTGCGGGCACAATTTTTGTCTGAAGTGTTTTGAGAAATGTATTAGGCAAGGAAAGAACACTTGTTCGAATTGTAGAACTCCGATTCCGGCGAAGATGGTGAGTAATCCGCGAATTAATTCGCAGTTGGCGATGGCAATTCGTAATGCGAAGCTAGCGAGATCGGAAGGTGGTGTTGGAGGGAGCGGCGGTTTGAAAGTTTATCATACTGTTCATAATGATGAGCTTCCTGATACTGCTTTTACTACAGAGAGAGCAAAGAAAACAGGGAAGGCGAATGCGTGTAGTGGGAAGATATTTGTGACGATTCCGAAAGATCATTTTGGGCCGATTGTTGCTGAGAATGATCCAACGAGGAACCGCGGGGTTCTTGTTGGTGATTCGTGGGAGGATAGGATGGAATGTAGGCAATGGGGGGCTCATTTTCCTCATGTTGCTGGGATTGCTGGTCAGAGTACTCATGGTGCTCAGTCTGTTGCGCTTTCTGGTGGTTATGTTGATGATGAAGATCATGGTGAGTGGTTTCTGTATACTGGAAGTGGTGGGAGAGATCTCAGTGGTAACAAACGAACCAATAAAGATCAGTCTTTTGATCAGAAGTTTGAGAGTTCGAATGAGGCTTTGAGACTCAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAAGAGAAACGATCCGCTTATGCTCCGGAAGAAGGAGTGAGATACGACGGCATTTATAGAATTGAGAAATGCTGGCGCAAAATGGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATCCGGAGACCGTCCCCGTTCACTACCTATAATTAATGAGTTTAAGGGTGCAACAGATATTACTGAAAGAAAGGGTGATCCATCATGGGACTTTGATGAGAAAAAGGGCTGCTGGTTGTGGAAGAAGCCCCCACCACTAAGTAAGAAAACAGGCAAAAGGGTGTCCTCCAAAAGCAAGAATACGCTGTTGAAAGATTTTGGTTGCAACATATGTCACAAAGTGTTGTCTTCACCTCTTACTACTCCTTGTGCTCACAACTTCTGCAAAGCCTGCCTGGAGGATGCCTTTTCTGGCCAAAGCTATATCAGAGAGAGGGCATCTCAAAGTGGACGCTCTTTGCGGACACGAAAGAACATTATGAAATGCCCTATTTGTTCAGCTGATATAGCTGATTATCTTCAGAATCCGCAGGTACTACTACTGAACATATGTTAA | 1812 | 0.4437 | MSRNSKPPSLSSENWIKNMTIKRRKKDLKIKSFSTKKTREKKKMAQFPCDSNGVCMVCKQKPLETETLYCTTCITPWHFTCLPLAPTSIAGWECPDCSQPNLTADSLAPSIAGDLVSSIRAIENDPSLTDEEKAKKRQELVGGSSTETETINRGCNDFLDIFDGSLNCSVCMQLLERPVTTPCGHNFCLKCFEKCIRQGKNTCSNCRTPIPAKMVSNPRINSQLAMAIRNAKLARSEGGVGGSGGLKVYHTVHNDELPDTAFTTERAKKTGKANACSGKIFVTIPKDHFGPIVAENDPTRNRGVLVGDSWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQKFESSNEALRLSCRKGYPVRVVRSHKEKRSAYAPEEGVRYDGIYRIEKCWRKMGIQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRSLPIINEFKGATDITERKGDPSWDFDEKKGCWLWKKPPPLSKKTGKRVSSKSKNTLLKDFGCNICHKVLSSPLTTPCAHNFCKACLEDAFSGQSYIRERASQSGRSLRTRKNIMKCPICSADIADYLQNPQVLLLNIC* | 604 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g0390 | 603 | SUPERFAMILY | RING/U-box | 517 | 588 | - | - | |
| Psa7g0390 | 603 | ProSiteProfiles | Zinc finger RING-type profile. | 527 | 585 | IPR001841 | - | |
| Psa7g0390 | 603 | SUPERFAMILY | RING/U-box | 159 | 218 | - | - | |
| Psa7g0390 | 603 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 44 | 597 | - | - | |
| Psa7g0390 | 603 | SMART | G9a_1 | 294 | 451 | IPR003105 | - | |
| Psa7g0390 | 603 | SUPERFAMILY | PUA domain-like | 273 | 467 | IPR015947 | - | |
| Psa7g0390 | 603 | ProSiteProfiles | Zinc finger RING-type profile. | 168 | 207 | IPR001841 | - | |
| Psa7g0390 | 603 | ProSiteProfiles | Zinc finger PHD-type profile. | 52 | 100 | IPR019787 | - | |
| Psa7g0390 | 603 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 107 | IPR013083 | - | |
| Psa7g0390 | 603 | ProSitePatterns | Zinc finger PHD-type signature. | 55 | 97 | IPR019786 | - | |
| Psa7g0390 | 603 | Pfam | RING-type zinc-finger | 527 | 568 | IPR027370 | - | |
| Psa7g0390 | 603 | Pfam | SAD/SRA domain | 302 | 450 | IPR003105 | - | |
| Psa7g0390 | 603 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
| Psa7g0390 | 603 | ProSitePatterns | Zinc finger RING-type signature. | 542 | 551 | IPR017907 | - | |
| Psa7g0390 | 603 | Gene3D | - | 270 | 469 | IPR036987 | - | |
| Psa7g0390 | 603 | MobiDBLite | consensus disorder prediction | 126 | 145 | - | - | |
| Psa7g0390 | 603 | SMART | ring_2 | 55 | 97 | IPR001841 | - | |
| Psa7g0390 | 603 | SMART | ring_2 | 527 | 584 | IPR001841 | - | |
| Psa7g0390 | 603 | SMART | ring_2 | 168 | 206 | IPR001841 | - | |
| Psa7g0390 | 603 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 501 | 602 | IPR013083 | - | |
| Psa7g0390 | 603 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 234 | IPR013083 | - | |
| Psa7g0390 | 603 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 44 | 597 | IPR045134 | - | |
| Psa7g0390 | 603 | SMART | PHD_3 | 54 | 98 | IPR001965 | - | |
| Psa7g0390 | 603 | ProSiteProfiles | YDG domain profile. | 299 | 447 | IPR003105 | - | |
| Psa7g0390 | 603 | SUPERFAMILY | FYVE/PHD zinc finger | 43 | 99 | IPR011011 | - | |
| Psa7g0390 | 603 | Pfam | Zinc finger, C3HC4 type (RING finger) | 166 | 211 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g0390 | Psa-Chr7 | 26696218 | 26700672 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g0390 | 46 | 597 | C2H2 Transcription Factor Family | AT5G39550 | 60.801 | 0.0 | 684 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g0390 | K10638 | - | gmx:100786796 | 847.81 |