Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0342 ATGAACGCCGTAACCGTCACAACAAAAGCTCAGATCCTCCGCTACGTAACCGCATTCATCACCGGCGTGATTCATCAATCAGAACTCCGGCGTCACCTCATTGAAACTCTCCACCGTGAAACTCCTGTAAATCAAGTAAACCTGAAACAATTGAACCTCGCTGCAGACGCTCTCGAAAGCGCCATTTCGTACTCTAGTTCCTCTATTCGTTCCTCTTCGCTCTCCCTAGCCGAGAAGCTTCTCCTTCCTCTCACTGATTATCCTCTTTCTTCTTTCATTCTCTCCCTCATTCTTATCCTCCGTAACCGCTCTGATGAATCCGCCATTAGTCTTCTTCAAATCTTCCATTCTAATCCTTCCCTCGCACGATCTGAAATAGCACCATCTCTCTACGAGCGCCTATTTTATATCCATCTCTTCCCTGTTTTCCGATGGTTCGATGAACAGAGAACACTGATTTTGCCATCCACTTGTGTAACCACGAGTGACTACTCCGACGAGTTAGTGGTTATGCCTTACGCGAAGTTGTTGTCGAATGTGAGTGGTGAACAAGCCTCAAAGCTGAGGGAGTTGGAAAGAGAGTACGGAGAGGTTCTAGATGAGAACTGTAGGGTTCTGGCTTTGTACTTTAAAGAAGTTTTGATGAATAAAGATGAAGATGCGGCTGTTACTCCACCTTTGCTGATACTGAAAAGCGCTGCAGAAGATGGCAATGGTGGTGGCGGAGAGCATAGAATGGAAGAAATGCAAATGCCTGAGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATACGTCTATTGAATTTTTGAGCAGCAATTCCAGCAGTAGATCCTCCCAGGCACCATTATATCCTCAAAGAGTCCCTCCCACAGTCCTCAATCCCCCAAAATCTTCTAAATATTGGACAACACCAGTCTATTTAAACTCAGCCCCTGAAACTCAATTTTCTTTAGATGAGAATTCACCTTGTTCTTCTTCAGATTCTGAAGCTGAAAACGAGGAAAAAGACAAAAATATAGCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGCTAGCCATCTTAAAGGAATCCATGGGCGCCCCAGATGATCCAATGGCAGATTACGAAAACACGCTGCTTATTGGAAGTGGGAAACAAACGCCTCCTAAAGACTTTGTCTGTCCGATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACGTATGAACGTAAAGCTATTGAGGAATGGTTCAATAGAGAGAACATAACTTGTCCTATCACTCGCCAGAAGCTGCAAAATACCAAGCTACCTAAAACAAATTATGTGCTCAAAAGACTAGTTGCCAGCTGGAAAGAATGCAACCCCAGTTCAGTCCTGCCAACATGCGAGAGTCCATTCAAAGATAACGAAGAAGAAGTAAAAACAACAATGCCTTCAGCTTCTCCTAATAGTGTCATAACACAAGCCACCGTTGATGGGATGATTAGTGAGTTACGCTGTGCAATCAATAACCTATACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAGTTGTGGAGAGGAGGGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTGTGGAGATACTTTTCAATTCTGTTGAACCCCAGGTCCTACAGGCAGCAGTTTTTCTCCTGGCCGAGATGGGGTCTAGAGACAATGTTGTTATTCAGACTCTCACACGTGTGGATACCGATGTTGAATGTATAGTGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTGTATGTCCTAAACCCTTCCACTGTGACTCTTTCCGAGATGGCCATAGTGGAGTCCCTCATAGCAGTTTTCAATAGGAAAGAGGAAGACTTAGTTAAGATGTGTTTAAATCCCAGAACAGCTGCAGTTCTTCTACTGGCACAGGTTATTGGAAGCAGCGGTGAGATAATTGCGTCTTCGGTTGTCAAAACTATGTTCTCTGAGAAAGCAATTGAAGCTGTTGTTGGAAGTTTGGGAGCTGAATGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGGAAGAGGACGGAACCTGCAGGAGCACCATTGCTGATAAAGCAGAGCTGTCTCCTATTCTTGAAAGCTTCATCAGTGCAACAGATGCAGAACGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAACTAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATTAAGGAAGAAGGACCTTTTAGTACAATGCACACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAAAGGCCAGTCATGGCCAGTCTTTTACTCCAACTTGATCTTCTGGTTGAACCGAGAATGATGAGCATATACCGTGAAGAGGCAATAGATACTCTTATTTCATGCCTGGGGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTGATACAATCATGTCACTGCAGGGAAGGTTCAACTCCTTTGGAAAGCCTCTTATCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAAAAGTCCCAGAAGTGCTGTACAGGAGGATCATATCAGCAACTTCTTCTCAGAAATTGAAACAATACCAGAAGAAGAGAAGGCAGCAGATGATTGGGAAAGAAAAATCGCATCTGTTCTAGTTAGCCACGAATTTGGTATACTTTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTTCAGAACTGCGTTCAGCATGCTTTATATCCGCTACGTGGCTCGTAAACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTCTGCTAAAGCAGTTTGTAAATAAATTAAATTCTGCCAAGGATATAGAACACCGAATCCTTTCTATGCTTGCTCTCAACAGCTTTCTTCATTTTTCTGATGGCGTACGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAACTAAAGAGATTATCTCCCTTGGCATCAGAGATGCTGAATGTTTTGGTTGATGAGAATCAGTCTAAAACAGACATTTGGAGACATAAAGAGCTAATTCAAGTAGATTGCAGAGATAATGGAGAAGTGTTGTCTGTCATTTGGTTCAAGGATAAAACTATTTCAGGCCATACAGATGGAAGAATCAAGGTAATAAATTTAGGATTTCACATACCATGTAAATTTTAA 3252 0.4284 MNAVTVTTKAQILRYVTAFITGVIHQSELRRHLIETLHRETPVNQVNLKQLNLAADALESAISYSSSSIRSSSLSLAEKLLLPLTDYPLSSFILSLILILRNRSDESAISLLQIFHSNPSLARSEIAPSLYERLFYIHLFPVFRWFDEQRTLILPSTCVTTSDYSDELVVMPYAKLLSNVSGEQASKLRELEREYGEVLDENCRVLALYFKEVLMNKDEDAAVTPPLLILKSAAEDGNGGGGEHRMEEMQMPELENGRYNPMWSERDTSIEFLSSNSSSRSSQAPLYPQRVPPTVLNPPKSSKYWTTPVYLNSAPETQFSLDENSPCSSSDSEAENEEKDKNIALLEPQQSQTQEQMLAILKESMGAPDDPMADYENTLLIGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKECNPSSVLPTCESPFKDNEEEVKTTMPSASPNSVITQATVDGMISELRCAINNLYMSEILQESEMAVLQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEPQVLQAAVFLLAEMGSRDNVVIQTLTRVDTDVECIVALFKKGLTEAVVLLYVLNPSTVTLSEMAIVESLIAVFNRKEEDLVKMCLNPRTAAVLLLAQVIGSSGEIIASSVVKTMFSEKAIEAVVGSLGAEWAEERIAAVEILLRCMEEDGTCRSTIADKAELSPILESFISATDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIYLQTALQDQRPVMASLLLQLDLLVEPRMMSIYREEAIDTLISCLGNSDFPTTQLAAADTIMSLQGRFNSFGKPLIREVLLKRAGVDKSPRSAVQEDHISNFFSEIETIPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRISELRSACFISATWLVNMLTILPDTGIQGAARVCLLKQFVNKLNSAKDIEHRILSMLALNSFLHFSDGVRDLTASYAKDILKGLRELKRLSPLASEMLNVLVDENQSKTDIWRHKELIQVDCRDNGEVLSVIWFKDKTISGHTDGRIKVINLGFHIPCKF* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0342 1083 Gene3D - 521 844 IPR011989 -
Psa7g0342 1083 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1072 - -
Psa7g0342 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 459 IPR013083 -
Psa7g0342 1083 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1072 - -
Psa7g0342 1083 MobiDBLite consensus disorder prediction 273 293 - -
Psa7g0342 1083 Pfam U-box domain 389 458 IPR003613 GO:0004842|GO:0016567
Psa7g0342 1083 MobiDBLite consensus disorder prediction 317 339 - -
Psa7g0342 1083 ProSiteProfiles U-box domain profile. 387 462 IPR003613 GO:0004842|GO:0016567
Psa7g0342 1083 MobiDBLite consensus disorder prediction 273 288 - -
Psa7g0342 1083 MobiDBLite consensus disorder prediction 317 331 - -
Psa7g0342 1083 CDD RING-Ubox_PUB 392 434 IPR045210 -
Psa7g0342 1083 SMART Ubox_2 391 455 IPR003613 GO:0004842|GO:0016567
Psa7g0342 1083 SUPERFAMILY ARM repeat 546 1036 IPR016024 -
Psa7g0342 1083 SUPERFAMILY RING/U-box 386 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0342 Psa-Chr7 23198862 23204053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0342 383 455 U-box Gene Family AT1G23030 49.315 3.72e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0342 - - gmx:100808867 1513.05