Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0307 ATGTCATCTTCATTCTCTATCTCTTCTTCACTACCATCACTTCAAAACCCCAACTTGGACCATTCCCATCTCTTCAATTCCCTCAAATTACCCAATCTCCGTTTCAATTCTAGAATCTCTTCACCGCCACGCTCTCGTCCCAACTTTCCCCAACTCTATAAAACTTCCACCACTCTTCGCCGTAGATTCCCATGCAATAAAGCTTTGAAAGATTCCGGTGATGGTGGCGGCGGTGGTGGAGATGGTGACCAGGAGGTTGAGAAGAAGAATGTGTCGTCCGGACTTTTTCCAGATTGGTTGAATTTCACTAGTGATGATGCCAAATCGGTTTTTGCTGCTTTGGCAGTTGCGCTTGCTTTTCGTACTTTCATTGCTGAGCCGAGGTTTATTCCTTCTTTGTCAATGTATCCGACATATGATGTTGGAGATAGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATTTTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATATACTGATAATGATGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGTGATATCGTAGAGGTTCGAAATGGACATGTTGTAGTTAATGGGGTTGAGAGGGATGAGAAGTTTATAAATGAAGCACCGAAGTATGAGATGAAACCCATACGTGTGCCAGAAAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTATGACTCACATGTGTGGGGTCCCCTGCCGGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCCGTCACAGTTGCTAAGGGAGGGTGCCCTGTTGAAACCAAGCCCGAGACTGCGAGTACTACTCTAGCATCTCAATTATGA 888 0.4347 MSSSFSISSSLPSLQNPNLDHSHLFNSLKLPNLRFNSRISSPPRSRPNFPQLYKTSTTLRRRFPCNKALKDSGDGGGGGGDGDQEVEKKNVSSGLFPDWLNFTSDDAKSVFAALAVALAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDNDVFIKRVVAKEGDIVEVRNGHVVVNGVERDEKFINEAPKYEMKPIRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAVTVAKGGCPVETKPETASTTLASQL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0307 295 Gene3D Umud Fragment, subunit A 120 275 - -
Psa7g0307 295 Pfam Signal peptidase, peptidase S26 107 264 IPR019533 GO:0004252|GO:0006465
Psa7g0307 295 TIGRFAM sigpep_I_bact: signal peptidase I 108 266 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa7g0307 295 CDD S26_SPase_I 126 258 IPR019533 GO:0004252|GO:0006465
Psa7g0307 295 ProSitePatterns Signal peptidases I signature 3. 231 244 IPR019758 GO:0004252|GO:0016021
Psa7g0307 295 PRINTS Bacterial leader peptidase 1 (S26A) family signature 123 139 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa7g0307 295 PRINTS Bacterial leader peptidase 1 (S26A) family signature 182 194 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa7g0307 295 PRINTS Bacterial leader peptidase 1 (S26A) family signature 226 245 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa7g0307 295 PANTHER SIGNAL PEPTIDASE I 60 274 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa7g0307 295 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 60 274 - -
Psa7g0307 295 SUPERFAMILY LexA/Signal peptidase 121 270 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0307 Psa-Chr7 20400661 20404201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0307 135 265 MADS-box Gene Family AT1G29960 34.091 3.00e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0307 K03100 - gmx:100815810 358.992