Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0279 ATGATAACCGATATGAAAAGTGGTGGTGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCGAGAGCTTGTGATAGCTGTTTGAGACGAAGAGCTCGTTGGTTTTGCGCTGCTGATGATGCTTTTCTTTGTCATGGTTGTGACAACTTGGTTCATTCGGCTAATCAGTTAGCGAGTAGACACGAGAGGGTTCGTCTTCAAACCGCGTCTGCTAAGGTGACTACGACGACAGCAACAGCAAAAGCGTGGCATAGTGGATTCACTAGAAAAGCAAGAACGCCGCGTCATAATAAGAATTCGTCGATTCAACAACAGCAACAACGGCTTAAGGAGAAGATTCTTTTCAATACTAGTTTTCTTCCGCTTGTTCCTGAGCTCGGAGGCGAAGAAGAAGAAGAAGATCGAGAACGGGGATTGCTAGTTGATATTAATGAGATTGAGGAGGAGGAGGAAGAGCAGTTGCTGTGTCGCGTCCCGGTTTATGATGTCGACCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGCTGCTGATTTTGAGGACATGTGTGATTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAGTTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTGAGATTCATGAGAATTCAACGGAACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATCCATCCAAAAATGAAATATTAAAGGTTAAAGATGAAGAACTTGATGACTTGGAATCGGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATATGGATCATGATGAATCAATGGTACACCAAGAGAAAGAGTTTATGCCTTTGAGTAATAGTAGTGTTGGTGTTAGTGAGAGTGTTATTACTAAAGAGGAAACAAAAAGAGAGAGATTTTTGAGACTAAACTATGAAGATGTTATTAGTGCTTGGTCTAGGCAAGGCTCTCCTTCTCTATGGACTACCGCAAACCCACCTAAGTTCAACTCCGATGATGATTCATGGCAAAATTTCTTGGGTTCAAGTGGTGTAGATGGAGAAATAAGAAGCATAAGAGGGAACTTAATAGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGAACAACATGTTTTGCTGGAGGAGCAACTCCATTTCCAACTAATTATCACTGA 1278 0.4022 MITDMKSGGADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVTTTTATAKAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKILFNTSFLPLVPELGGEEEEEDRERGLLVDINEIEEEEEEQLLCRVPVYDVDPFDLENCNVKNDAADFEDMCDLDSFCEFDVDLAEFAANVESLLGVGSSEIHENSTEQVFDYKQENEMDPSKNEILKVKDEELDDLESVFDMTSDEVFHWNMDHDESMVHQEKEFMPLSNSSVGVSESVITKEETKRERFLRLNYEDVISAWSRQGSPSLWTTANPPKFNSDDDSWQNFLGSSGVDGEIRSIRGNLIGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTTCFAGGATPFPTNYH* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0279 425 CDD Bbox1_BBX-like 22 65 - -
Psa7g0279 425 Pfam CCT motif 367 409 IPR010402 GO:0005515
Psa7g0279 425 SMART bboxneu5 18 65 IPR000315 GO:0008270
Psa7g0279 425 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 415 - -
Psa7g0279 425 ProSiteProfiles CCT domain profile. 367 409 IPR010402 GO:0005515
Psa7g0279 425 Coils Coil 128 148 - -
Psa7g0279 425 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Psa7g0279 425 Pfam B-box zinc finger 20 63 IPR000315 GO:0008270
Psa7g0279 425 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0279 Psa-Chr7 18571500 18574594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0279 12 409 C2C2-CO-like Transcription Factor Family AT1G25440 42.857 1.69e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa7g0279 zf-B_box 5.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0279 - - adu:107478728 406.757