Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0254 ATGGCGACGCCATTAGACGGCGGAGGAGTGGCGGTTCTTACGAACTCGGCGAACAAAGTCGATTCCTCTTCGGCGCTTAATGGCGGTTTGAAGTGCTCCAAACTCGACTCGCCGATTTTGATTTTCTTGTTCTTTCATAAAGCGATTCGGAATGAACTTGACGTTTTACACCGATTAGCCATGGCATTCGCTACCGGTAATCGCTCTGATATTCAGCCACTTTTCGAGCGTTACCGTTTTCTCAGTTCCATTTATAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCCGCTCTAGATAGACGTGTGAAGAATGTTGCAAAAACTTATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTTTTTGAGTTGTTAAATTCTTCCATCAAGAATGACGAAAGTTTTCCAAGAGAATTAGCATCTTGCACAGGAGCCTTACAGACATCAGTTAGTCAACACTTGGCAAAGGAAGAGGAACAGGTTTTTCCTCTGCTTATTGAAAAGTTCTCTCTTGAGGAACAAGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAACATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCAGATGAATCTCAGGATTTACGAGATTTCTTAGTCAAGATTGTGCCAGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACTTGGATGGAAGGGAGAAGTAGTGTTAATAAAATTCAAAGTAGTGCGGATCATTCTCAAGTATGTTGTTCCAGCCCGTTAACCCATCAGGCTGGAAGAGTCAATTGTGTATGCGAATCCACGACAACTGGAAAAAGGAAACATTCTGGATCTATGCAAGATGTTTCTGATGCCACCGGAACACACCCTATAGATGAGATATTGCTCTGGCATAATGCAATAAAAAAAGAGCTTAGTGAGATAGCAGTGGAGACCAGAAGGATACAACGTTCCGGAGATTTTACTGACATATCAGCTTTTAATGACAGATTGCAATTCATTGCTGACGTTTGCATATTTCATAGTATTGCGGAGGACAAGGTTATTTTTCCGGCGGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCGGCATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAACACTTCAGCTTTAGAAGACAGTGTGAACTTCTGTACCAAAGCTTATGCATGATGCCTCTGAAATTGATAGAGAGAGTCCTACCATGGTTGGTAAAATCTTTAACAGAAGAAGAAGCAAATATATTTCTGAGAAACATGCAATTTGCAGCTCCAACAGCAGATTCTGCTCTGGTCACCCTCTTCAGTGGTTGGGCATGCAAGGCTCGTAATGAAGGCCTGTGTCTGTCTTCAGGCACATCAGACTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAGATATTGATCAGCCATCCTGTGTTTGTTCCTCTGCATCATCTTGCAGACATTGCTCAGTAATACTTGAGTCAGATGGCAACAAAAGACCAGTCAAGCGAAACACATTGAAATTGAGCAATGGAGATGTACCTGAAACTTTGGAGACTGAAAGTATCCCGAAACAGTGCTTTAGTCCTCGGTCTTGTTGTGTACCAGGTTTAGGAGTAAACAGTAACAATTTGGGGCTTAGTTCAGTTTCGACAACCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCTGCTCCTTCTCTTAATTCCAGTCTTTTCATATGGGAAGCAGAGAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATAGTGACGAGACAGTTATTAGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATGTGAGCCATTCATACATGTTGGACCATAAGCAAGAAGAACAATTGTTTGAAGATATTTCTTGCGTGCTTTCTGAGTTTTTTGTCCTTCATGAAGCCTTGCAGTTGACCCATATGGCAGGGGATTTGATTGATAGTAATTTTGGAACTTCTGATACAAATGATAGTGATGGTGTCAAGAAGTATAACGAACTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGTGTGAACTGTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCTTGGGTAACTTCTGCACTTACTCAGGATGAGCAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAATACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCGGAATCTATAACACAGACAGAAACGTCACATTGTAGCACTTCTCACAGAGGTTCTGAGTATCAGGAATGCTTGGACCACAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGACTGAACTTGAGTCAGAGATTCGGAAGGTTTATCGCGATTCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTTTGACAAGTCGTTGGATAGCTTCCCAGCAGAAATCACCTAAAGCTCCATCTGAAGAAGGATTATCAAATGGTGTTGAAATAGAAGGACACTCACCATCATTTCGGGACCCTAGGAAACTTGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCATGAATATACAACCAATTGGGTCTATATGCATGACACCTTCATGTAACGCACTTTCAATGGCAAAGTACTATTGCAGTATATGCAAATTTTTTGATGATGAAAGGAATGTATACCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGTCTAGGGATTGATTATTTTCATTGCATGAAATGCAATTGCTGCCTGGGGATTAAAACATCATCTCATAAGTGCCTAGAGAAAGGTTTAGAAATGAACTGCCCAATATGCTGTGACGACTTATTCACGTCAAGTGCTACAGTCAGAGCTCAGCCCTGTGGCCACTACATGCATTCTGCTTGCTTTCAGGCCTACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAGTCATTGGGTGATATGGCGGTTTATTTTGGTATGCTTGATGCCTTATTGGCTGCAGAGGAGCTCCCTGAAGAGTATAGAGACCGCTATCAGGACATACTTTGCAATGACTGTGATCGAAAGGGAACTTCCCGCTTCCACTGGTTGTATCACAAATGTGGGTCTTGTGGCTCTTACAATACTCGGTTGATCAAGCGCGAGACACGCTGA 3693 0.4148 MATPLDGGGVAVLTNSANKVDSSSALNGGLKCSKLDSPILIFLFFHKAIRNELDVLHRLAMAFATGNRSDIQPLFERYRFLSSIYRHHSNAEDEVIFPALDRRVKNVAKTYSLEHKGESNLFDHLFELLNSSIKNDESFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISADESQDLRDFLVKIVPEERLLQKVVFTWMEGRSSVNKIQSSADHSQVCCSSPLTHQAGRVNCVCESTTTGKRKHSGSMQDVSDATGTHPIDEILLWHNAIKKELSEIAVETRRIQRSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESILSEGAASNSEVEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVKSLTEEEANIFLRNMQFAAPTADSALVTLFSGWACKARNEGLCLSSGTSDCCPAQRLSDIEEDIDQPSCVCSSASSCRHCSVILESDGNKRPVKRNTLKLSNGDVPETLETESIPKQCFSPRSCCVPGLGVNSNNLGLSSVSTTKSLRSLSFSSSAPSLNSSLFIWEAESSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDSDETVIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFFVLHEALQLTHMAGDLIDSNFGTSDTNDSDGVKKYNELATKLQGMCKSIRVTLDQHIFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESITQTETSHCSTSHRGSEYQECLDHNDQMFKPGWKDIFRMNQTELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIASQQKSPKAPSEEGLSNGVEIEGHSPSFRDPRKLVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCMNIQPIGSICMTPSCNALSMAKYYCSICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKTSSHKCLEKGLEMNCPICCDDLFTSSATVRAQPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRLIKRETR* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0254 1230 CDD Hr-like 297 426 - -
Psa7g0254 1230 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Psa7g0254 1230 Pfam Hemerythrin HHE cation binding domain 294 428 IPR012312 -
Psa7g0254 1230 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Psa7g0254 1230 Pfam Hemerythrin HHE cation binding domain 642 804 IPR012312 -
Psa7g0254 1230 PANTHER CHY ZINC FINGER PROTEIN 25 1229 - -
Psa7g0254 1230 SUPERFAMILY Zinc hairpin stack 1056 1112 IPR037275 -
Psa7g0254 1230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1115 1163 IPR013083 -
Psa7g0254 1230 SMART ring_2 1119 1160 IPR001841 -
Psa7g0254 1230 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Psa7g0254 1230 SUPERFAMILY CHY zinc finger-like 985 1046 IPR037274 GO:0008270
Psa7g0254 1230 Gene3D - 1190 1229 - -
Psa7g0254 1230 CDD RING-H2_Pirh2 1118 1161 - -
Psa7g0254 1230 Pfam Ring finger domain 1118 1160 IPR001841 -
Psa7g0254 1230 CDD Hr-like 41 167 - -
Psa7g0254 1230 Gene3D nmb1532 protein domain like 35 187 - -
Psa7g0254 1230 Gene3D nmb1532 protein domain like 297 444 - -
Psa7g0254 1230 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
Psa7g0254 1230 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 1229 - -
Psa7g0254 1230 SUPERFAMILY RING/U-box 1117 1164 - -
Psa7g0254 1230 CDD Hr-like 644 804 - -
Psa7g0254 1230 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Psa7g0254 1230 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Psa7g0254 1230 Gene3D nmb1532 protein domain like 638 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0254 Psa-Chr7 16742757 16754372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0254 37 1229 C2H2 Transcription Factor Family AT3G18290 68.447 0.0 1679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0254 K16276 - gmx:100801725 2167.5