Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0246 ATGCAAATTCCATTTTCTAATCATATGGATAAACTCTTATTCAATTGTTGCATTGCATACTTTATCTTTTTTTCTCTCTTGTTTGTTCATGCCAAAGAATTATCATGCAATCAAACACCATACCCTCATGTCTGTAACCATTACATTGGAACCACTAATACGCTATCAACCATACATTCTTCTTCATTCCATGATATTGCCATTAAGGTTACCATGGACCAAGCTATTGACGCATACAAACTTGTGTCCACCATGGATTTGAATAATTTCAAAGACAATAGAGCCAAGTCTGCATGGGAAGATTGTGTAGAGCTTTATGAGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAAAAATTTAAATGACAAATTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCTAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAATTACTTCCCTTCCATGTTAACCAACTTTACTAAATTGCTTAGCAATTCCTTGTCCATAACCAACACTCTAGCTTCTTCATCATCATCATTGTCATCCTCAAATACGAAACAAAAGGGAGGGAGAAGATTGTTATCAGATGGATTCCCCTATTGGCTATCAGGTTCAGATAGAAAGCTTCTGCAGACGACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGGAACTATAAGACAATCTCAGAGGGTGTAGCTGCTACTTCTAAGCTTAGTGGAAAAGGAAGAGTTGTAATTCATGTGAAAGCAGGTGTTTATAAAGAAAAAATTGATATCAAGAGGACACAGAAGAACTTAATGATATTTGGAGATGGAATGGATTCCACTCTTGTTACCGGTAATCATAACTTTCAAGATGGCTCAACAACTTTTAATTCAGCTACTTTTGGTGTAATGGGAGATGGTTTTATTGCTAAAGATATGACCTTCGAGAACACAGCCGGACCACAAAAGCACCAAGCAGTGGCCTTCGTTTCCGGCTCCGATCATTCCGTTTACTACCGTTGTTCCTTCAAAGGCTACCAAGACACTCTATACGTCTACGCCAACCGTCAATTCTACCGTGACTGTAACATCTACGGAACAGTCGATTTCATCTTCGGTGACGCTGTTACCGTCCTTCAAAACTGCAACATCTTCCTTAGAAAACCTATGAGCAATCAACAGAACTTCGTTACAGCACAGGGAAGAACAGATCCAAACGAGAACACCGGAATAGTGATCCATAACTGCCGTATCACCGCAGCTGGTGATTTGGAACCATATCAGAATTCGGTGAAAAGTTATCTTGGTAGGCCGTGGAAGAAATATTCAAGAACGGTTGTAATGAAAAGTAACATTGATGGCTTGATAAATTCAAAAGGTTGGGCTCCATGGAGTGGTGGTTTTGCTTTGAGCACACTTTACTATGGTGAATATATGAATATCGGTGATGGTGCTAATACAGATGGGAGAGTGAATTGGTCTGGTTTTCATGTTATTACAAATCCTTCAGAAGCTGTTAAATTTTCTGTTGGCAATTTCTTGGCCGGTGAGTCATGGATTTCTGGAAGTGGTGTGCCGTTTGATGCAGGCTTGTGA 1599 0.3927 MQIPFSNHMDKLLFNCCIAYFIFFSLLFVHAKELSCNQTPYPHVCNHYIGTTNTLSTIHSSSFHDIAIKVTMDQAIDAYKLVSTMDLNNFKDNRAKSAWEDCVELYEDTIYQLNRSINSKNLNDKLTWQSASITNHQTCLNGFIDFNLPSHLNYFPSMLTNFTKLLSNSLSITNTLASSSSSLSSSNTKQKGGRRLLSDGFPYWLSGSDRKLLQTTPSADIVVAQDGSGNYKTISEGVAATSKLSGKGRVVIHVKAGVYKEKIDIKRTQKNLMIFGDGMDSTLVTGNHNFQDGSTTFNSATFGVMGDGFIAKDMTFENTAGPQKHQAVAFVSGSDHSVYYRCSFKGYQDTLYVYANRQFYRDCNIYGTVDFIFGDAVTVLQNCNIFLRKPMSNQQNFVTAQGRTDPNENTGIVIHNCRITAAGDLEPYQNSVKSYLGRPWKKYSRTVVMKSNIDGLINSKGWAPWSGGFALSTLYYGEYMNIGDGANTDGRVNWSGFHVITNPSEAVKFSVGNFLAGESWISGSGVPFDAGL* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0246 532 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Psa7g0246 532 PANTHER PECTINESTERASE 27 531 - -
Psa7g0246 532 TIGRFAM PME_inhib: pectinesterase inhibitor domain 34 176 IPR006501 GO:0004857
Psa7g0246 532 Pfam Pectinesterase 220 517 IPR000070 GO:0030599|GO:0042545
Psa7g0246 532 Gene3D - 214 532 IPR012334 -
Psa7g0246 532 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 27 531 - -
Psa7g0246 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 176 IPR035513 -
Psa7g0246 532 Pfam Plant invertase/pectin methylesterase inhibitor 35 172 IPR006501 GO:0004857
Psa7g0246 532 SUPERFAMILY Pectin lyase-like 215 531 IPR011050 -
Psa7g0246 532 SMART PMEI_2 29 172 IPR006501 GO:0004857
Psa7g0246 532 CDD PMEI-like_3 34 177 - -
Psa7g0246 532 ProSitePatterns Pectinesterase signature 1. 246 265 IPR018040 -
Psa7g0246 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 179 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0246 Psa-Chr7 16473430 16475620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0246 11 532 Carbohydrate Esterase AT1G23200 50.722 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0246 - - gmx:100775898 805.823