Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0228 ATGCAAACTCCAATGTCTAATCATATGAATAATCTCTTATTCAATTGTTTCATTGGATATTTTCTCTTCTTTTCTCTTTTGTTTGTGCATGGTAAAGAATTGTCATGCAATCAAACACCATACCCTCATGTCTGTAACCATTACATTGGAACCACTAATACGCTATCAACCATACATTCTTCTTCCTTTCATGACACTGCAATTAAGGTTAGCATGGACCAAGCTATTGAAGCATACAAACTTGTCTCAATCATGGATTTGAATAATTTCAAAGACAATAGAGCCAAGTCAGCATGGGAAGATTGTGTAGAGCTTTATGAGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAACAATTTCAATGACAAATTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCTAAATGGTTTTATTGATTTCAACCTCCCCTCTCACTTAAACTACTTCCCTTCCATCTTAACCAACTTTACTAAATTGCTTAGCAATTCCTTGTCCATTACCAACACTCTAGCTTCTTCGATGCCGTCTTCATTATCGTCCTCCTCGTTGTCAAGCACAAAACAAAATGGTGGGAGAAGGTTGTTATCAGATGGATTTCCACATTGGCTTTCCGGTTCAGATAGAAAGCTTCTGCAAACGACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGAAACTATAAGACAATCTCAGAGGGCATAGCAGCTGCTAAGGGAAGTGGAAAAGGAAGAGTTGTGATTCATGTGAAAGCAGGTGTATATAAAGAGAACATTGATATAAAGAAGACAGTGAAGAATATAATGATATTTGGAGATGGAATGGATTCCACCATTGTTACCGCTAATCATAACGCAGAAGATGGTTCTACTACTTTCCGTTCAGCTACTTTTGCTGTTATGGGAGATGGTTTCATAGCAAAAGATATGACCTTCGAGAATACTGCCGGACCACAAAAACACCAGGCGGTGGCTCTCCGTTCTGGCGCCGATCACTCCGTTTTCTACCGATGTTCCTTCAAAGGCTATCAGGACACTCTATACGTCTATGCCAACCGTCAATTCTACCGTGACTGTAACATCTACGGAACAGTCGATTTCATCTTTGGCAACGCCGTTACAGTTCTTCAAAACTGCAACATCTTAGTTAGGAAACCTATGGGCAACCAACAGAACACCGTAACGGCACAGGCAAGAACAGATCCAAACGAGAATACCGGAATTGTGATCCATAACTGCCGTATAACCGCTGCTGGTGATTTGAAAGCATCTCAAAATTCGGTAAAAAGTTATCTAGGAAGACCGTGGCAGAAGTATTCAAGAACGGTAGTTATGAAAAGTAACATTGATGGTGTTATAAACTCACAAGGTTGGGCTCCATGGAGTGGTGGTTTTGCTCTGAGTACACTTTACTATGGTGAATATATGAATGTTGGTGATGGTGCTAATACTAATGGGAGAGTAAATTGGTCTGGTTTTCATGTAATTACAAATCCTTCGGAAGCTGTTAAATTTTCTGTTGGTAACTTCTTGGCTGGTGAGTCTTGGATTTCTGGCAGTGGTGTGCCCTTTGATTCAGGCTTGTGA 1608 0.3999 MQTPMSNHMNNLLFNCFIGYFLFFSLLFVHGKELSCNQTPYPHVCNHYIGTTNTLSTIHSSSFHDTAIKVSMDQAIEAYKLVSIMDLNNFKDNRAKSAWEDCVELYEDTIYQLNRSINSNNFNDKLTWQSASITNHQTCLNGFIDFNLPSHLNYFPSILTNFTKLLSNSLSITNTLASSMPSSLSSSSLSSTKQNGGRRLLSDGFPHWLSGSDRKLLQTTPSADIVVAQDGSGNYKTISEGIAAAKGSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTANHNAEDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCNIYGTVDFIFGNAVTVLQNCNILVRKPMGNQQNTVTAQARTDPNENTGIVIHNCRITAAGDLKASQNSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYMNVGDGANTNGRVNWSGFHVITNPSEAVKFSVGNFLAGESWISGSGVPFDSGL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0228 535 ProSitePatterns Pectinesterase signature 1. 249 268 IPR018040 -
Psa7g0228 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 176 IPR006501 GO:0004857
Psa7g0228 535 Gene3D - 218 535 IPR012334 -
Psa7g0228 535 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Psa7g0228 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 178 IPR035513 -
Psa7g0228 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 176 IPR035513 -
Psa7g0228 535 PANTHER PECTINESTERASE 27 534 - -
Psa7g0228 535 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 27 534 - -
Psa7g0228 535 Pfam Pectinesterase 224 520 IPR000070 GO:0030599|GO:0042545
Psa7g0228 535 Pfam Plant invertase/pectin methylesterase inhibitor 35 172 IPR006501 GO:0004857
Psa7g0228 535 CDD PMEI-like_3 34 177 - -
Psa7g0228 535 SUPERFAMILY Pectin lyase-like 219 534 IPR011050 -
Psa7g0228 535 SMART PMEI_2 24 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0228 Psa-Chr7 15659060 15661590 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0228 35 535 Carbohydrate Esterase AT1G23200 52.652 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0228 - - gmx:100775898 822.387