Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0170 ATGGTGAAAGCAGCGAGCGAGAATGGTTTTTCTTCTGTGGCACCTTTCTTGACGAAATGTTACGATATGGTTGAAGATCCTTCCACCGACTCCATCATCTTTTGGTCTCAATCCGATAACAGTTTCATCATCGATAACGTCTCTCAATTCTCTCTCACTCTTCTTCCTAATTACTTCAAACACAACAATTTCTCCAGCTTCGTTAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATAATTGGGAATTTGCCAATGAAAACTTCATTAGGGGTAAAAAGCATTTGTTGGACCGAATTATACCCTCAACACAGATGCTATCGTTCTTGGTCATGGTCGTACAATGCCCTGGATTCCTGGCTCAGCTGCTTCACCCTAAGGAAAATAACTGGCGTTTTGCAGAAGAAGGGAATATGTGGGACCACAGTAGCCCAGATGACGAACCAGTTCCTTCTGATGGAATGATCGTTAAGTATAAGCCACCTGTAAGTGAAACGCTAAAGCCTGTAGTTCCGCTATCTTCAGCCTTTGAACCAGAACCCGAACTTTCTGCAGACGGGATGAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAATTGCTGCTAGATGAGAAATTATCTCCATTAGATAACCATTCTCCGTTTCTCGTACCGGATTTACCTGATGATGGTTCGTGGGAAAAACTTTTTTTGGGCAGTCCTTTCCCCGAAAACGTTGCAGATACTGATCATGAAAATGAGAGGCACAATGTTAGTGAAATGGAGACGGAACCTATCACGGAAACTCCAAATAAAAGATCTGCTTTTGAAGCAATGATTGTAGAAATGGAGAAAACTCAAGCATGA 852 0.4178 MVKAASENGFSSVAPFLTKCYDMVEDPSTDSIIFWSQSDNSFIIDNVSQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDTDNWEFANENFIRGKKHLLDRIIPSTQMLSFLVMVVQCPGFLAQLLHPKENNWRFAEEGNMWDHSSPDDEPVPSDGMIVKYKPPVSETLKPVVPLSSAFEPEPELSADGMKDLCISSEFLKLLLDEKLSPLDNHSPFLVPDLPDDGSWEKLFLGSPFPENVADTDHENERHNVSEMETEPITETPNKRSAFEAMIVEMEKTQA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0170 283 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g0170 283 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g0170 283 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g0170 283 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 102 IPR027725 -
Psa7g0170 283 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 107 264 IPR027725 -
Psa7g0170 283 Pfam HSF-type DNA-binding 16 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g0170 283 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g0170 283 Gene3D - 9 105 IPR036388 -
Psa7g0170 283 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g0170 283 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 102 - -
Psa7g0170 283 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 107 264 - -
Psa7g0170 283 SUPERFAMILY "Winged helix" DNA-binding domain 12 102 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0170 Psa-Chr7 12486914 12488225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0170 97 236 HSF AT1G67970 38.356 1.69e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa7g0170 HSF_DNA-bind 1.9e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0170 K09419 - gmx:100813694 248.054