Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0169 ATGGAGAATTCACGAAGACCGTTTGTTAGATCGAAAGAACCAATTTTGAAGCGACCCAGATTAATGAAAGATCTGGAACGTTCTCCTAATTCGAGTGCTCCAGTGTTTCCACAGAGACAACAGCAAGTTACTTCTGCTTCACGGTTCAGACAGAATGAAAGAGAAGAGGAGAATGTCGACGGTGGTTACCAGCCTCAGCCGTTGCCGTTTCAGGAGCTTGTGGCTCAGTATAAGAGTGCGCTTGCAGAGCTCACTTTCAATTCGAAACTGATAATTACCAACCTGACTATAATTGCAGGCGAAAATCGAGCTGCTGAGAAGGCCGTTGCTGCCACTATAAGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAAACTACCCGAGGTGTTCTGCAAGGCATACAGACAGGTTGATCCTCCTGTCCGTCAAAGTATGAAACACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGCTATAGACAAAGAACTGGGCTTCACTCCAGCAGTCAATGGTTCGTCTTCAGCATCTGCATCTGCTGCACTCAGGAGTGATTCCCAGACACATCAACCACCTCATAGTATACATGTGAATCCCAAGTATTTTGAACGACAGCGTGTTCAGGAGTCCAGCAGGACTAAAGGAGTTGTTGATGATATGACTGGGGTAATTGCAATCTCAAATGATGACCATTTTGCTGTTAACATCTACTTATGGCTAAGTAATCAGCACACTCATAGAGACCCATTCGACGATCCTGTTCCAGAAAAGAGCATCAGTGCATCCTATGGAGGCAGTGAACATGGTTCCAATCTTTCAAGGAATATGGGCGTGGGTATTGGCAGAACTGATGGCAGCATAACCGAGTTAGGACACAGAACTTTGTACAACAAAACTGCTGCTGGTGTTTCAGGGTCCATATCTGGGCAAAGAAATGGTGTTGGCCTCAAGCATAGTTTTTCAAATACTGAAGCTACTACTATTTCGGATGCACAACATCAGCCAACACGAAACATAACTGGCATAAAGAGAAATGTGATGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGATGAACACTGGATTGACTAGTCATGGTGTCCGTAACAACTTGGGAAACGACGCTTGGACTGCTGATGATGAGAATTTGGACGCTGAAGATAACCACCACCAAATCAGAAATGTTTTTGGGACAAATGTTGATAGAGAAATGACCAATAGATCTCAAGCCACTCAAAAGAAACAATTTCGGCATCATCCGTCATTATCATGGAAATTGCAGGAGCAGCAATCAATTGATGAATTGAATAAGGAACTGGGTCACTCGGATGTATGTATGTCAATGTCTGGTTCCTTACTAGGCAATGCAAATTCTTCTGCCGCCAGGATGGGAAACCGTGCTTTCCTGCCCAATGCAAGAACTGGAGGACATCAATTTCATTCTGTGGGATCTGAGTCCACTTCTGGGCAGTCACCTTTGCGACAACGCTCTCCCTCGCCACCAAGTATTGACCACTCTCATCTAATGGAAAATTTTGATAAGCAAGACCATCCTTACACTCGAAAAACATCTCATTTTTTGGGAGGTCTGCATAGCCAATATATTAAAGATTCTTCATCCACCCTTTCTCCTAATATTCAGATTGGAGACTTGCAAAGATCATCACAGGTAAAAGACTTGCAGTGTCCATTACCTTCAGCGAGTTTTCAGCCAAGATATCGGCAACAACTGAGCTCTTCTCACACTGAAGTAACTGAGAAGCCACCCTTAGCCAATGTTTCTCTAGCTCGAGAAACCTCAGAGCAGCCAGCCACAAGTCATACAGAAGCTGCAAGTGTGAAGAGTAGACTATTCTCCAACAAGCCAATTACTAGTAGTCTTCCATCTCTATTAGGGTCTCGGCCTTCTCAGTCAGGTGGTTCTTTAGTGTCTGCAAATGCTTCTCCATCTTCATCTGCTTTACCAAAAAGACCTAAAAGAAAGGCCGGACAAACAATAAGGACATCTACTCTACCACCAGCTTCCTCTAATGTCAGCAGTGCCTCAGCGCAGACATCTGGTCCTACAAATAAAACCTCAAATCCACTTTCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCCACAGAAACTGAGACACTGGCTGAGGTGCCATCTGAGGTGGTGACTCGATTGGAAGATCACTGCGACAGCTTTAGTACCAGTAGCTCTATGCCTGTTGCTTCATTGTCTGGTTCTGCAGCTGTCCCCGTTCCTTCAAACAAAGATGAGTTAGATGATACTGCAAAAACACCTATGTCCTTATCTGAATCAACCAGCACAGATATTAGAAATGTCATTGGCTTTGAGTTTAAGCCTAATGTAATCAGAAAGTTGCATCCATCTGTAATTGCTGGATTATTTGATGATTTTCCACATCATTGCAGCATTTGTGGCCTTAAGCTCAAATTCCAAGAACAGTTTAGTAGACACTTGGAGTGGCACGCCACAAGAGAAAGAAAACAAAGTGGTTTAACTACACCATCAAGATGGTATCTGAAGTCAACTGACTGGGTTGCCGGCCAAGCTGAATGTTCATCTGAAAATGAGTTTACTGATTCTGTAGATTCACAAGACAAGGAAACAGATGAAGGTCAAGAGGATGCAATGGTTCTAGCAGATGAAAACCAATGCTTATGCGTGTTGTGTGGTGAGCTATTTGAAGATGTTTACTGTCAGGAAAATAGCGAGTGGATGTTCAAAGGGGCTGTTTACGTGACTGGCTCTGATAGCGATACTGAGATGGGAATCAAAGATACATGTTCTGGAAGGGGTCCCATCATTCACACAAAATGCTTATCAGATAACTCGTTATTGAGTGTCCTCAAGATGGAACAGGATTGA 2994 0.4332 MENSRRPFVRSKEPILKRPRLMKDLERSPNSSAPVFPQRQQQVTSASRFRQNEREEENVDGGYQPQPLPFQELVAQYKSALAELTFNSKLIITNLTIIAGENRAAEKAVAATISANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPPVRQSMKHLFGTWKGVFPPQTLQAIDKELGFTPAVNGSSSASASAALRSDSQTHQPPHSIHVNPKYFERQRVQESSRTKGVVDDMTGVIAISNDDHFAVNIYLWLSNQHTHRDPFDDPVPEKSISASYGGSEHGSNLSRNMGVGIGRTDGSITELGHRTLYNKTAAGVSGSISGQRNGVGLKHSFSNTEATTISDAQHQPTRNITGIKRNVMSSSWKNSEEEEYMWDEMNTGLTSHGVRNNLGNDAWTADDENLDAEDNHHQIRNVFGTNVDREMTNRSQATQKKQFRHHPSLSWKLQEQQSIDELNKELGHSDVCMSMSGSLLGNANSSAARMGNRAFLPNARTGGHQFHSVGSESTSGQSPLRQRSPSPPSIDHSHLMENFDKQDHPYTRKTSHFLGGLHSQYIKDSSSTLSPNIQIGDLQRSSQVKDLQCPLPSASFQPRYRQQLSSSHTEVTEKPPLANVSLARETSEQPATSHTEAASVKSRLFSNKPITSSLPSLLGSRPSQSGGSLVSANASPSSSALPKRPKRKAGQTIRTSTLPPASSNVSSASAQTSGPTNKTSNPLSNLLSSLVAKGLISTETETLAEVPSEVVTRLEDHCDSFSTSSSMPVASLSGSAAVPVPSNKDELDDTAKTPMSLSESTSTDIRNVIGFEFKPNVIRKLHPSVIAGLFDDFPHHCSICGLKLKFQEQFSRHLEWHATRERKQSGLTTPSRWYLKSTDWVAGQAECSSENEFTDSVDSQDKETDEGQEDAMVLADENQCLCVLCGELFEDVYCQENSEWMFKGAVYVTGSDSDTEMGIKDTCSGRGPIIHTKCLSDNSLLSVLKMEQD* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0169 997 CDD CID_Pcf11 74 190 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 1 25 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 602 622 - -
Psa7g0169 997 SMART 558neu5 72 194 IPR006569 -
Psa7g0169 997 MobiDBLite consensus disorder prediction 699 730 - -
Psa7g0169 997 Gene3D - 69 194 IPR008942 -
Psa7g0169 997 MobiDBLite consensus disorder prediction 602 730 - -
Psa7g0169 997 Pfam CID domain 78 188 IPR006569 -
Psa7g0169 997 ProSitePatterns Zinc finger C2H2 type domain signature. 845 865 IPR013087 -
Psa7g0169 997 MobiDBLite consensus disorder prediction 897 917 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 903 917 - -
Psa7g0169 997 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 994 - -
Psa7g0169 997 ProSiteProfiles CID domain profile. 69 197 IPR006569 -
Psa7g0169 997 MobiDBLite consensus disorder prediction 1 63 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 513 537 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 780 807 - -
Psa7g0169 997 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 994 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Psa7g0169 997 SUPERFAMILY ENTH/VHS domain 72 194 IPR008942 -
Psa7g0169 997 MobiDBLite consensus disorder prediction 630 688 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 206 228 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 206 223 - -
Psa7g0169 997 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0169 Psa-Chr7 12212163 12217731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0169 817 982 C2H2 Transcription Factor Family AT4G04885 38.596 1.18e-31 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0169 K14400 - gmx:100807857 1108.59