Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0128 ATGTCTTCTTCTTCTGTCACACAAACAAAAACAGAACAACAACATAGGATGAAATCGAGAAAACCCAGAAACCAAATCAAAAACCACCACAAACCCATTTCACAAATGGATCAACAAACCCAAACCACTCGTTGCAACTCCACAATTTCATCTCTTCTTCTCTCCACATTCTCCAATGAAACCGCTGTTTCTCAGCAACCCACCACCAGCAAAAAGATTAACTTTTTATCTGCGGCAGCTACTTTCAGAGGCTTAGGATGTACTGCCGGTGCCTCTCAGCAGGTGTCGGTGCCGGCGGTGATTCGTGCTTCTGCAGATTGGACTCATCAAGGGAAGAAAACCAGAAAAAAGAAGCATAAGGGGAATACTGCAGGAGGGAGTAGCAAAAATAGTAGTAATGAAGGTTCTTCTTCTACCTGTGTTGATTTTCAAGATGTTTGGTGTGGACCTGGAATTGATGCTGCTGCTTCTGTTGATTGTGTTGTTTCAAAGAAGAATGTCTCTTCAAGGGCTAAGATTGATTTGGAAAAGATAACTCACCGAGAGCCTTCATCTTCATTCCGAAGGCGTACTACTGTCTACCCAGATACTGATCCTGACATTTTCACGGCGTGCTCTTTTGGAACTGCAACATACCCTCGCCATATCCGCGATCTCTCTTCTGATGATTTATCTGAGATAATGTTGCTTCAAGGAAGAATACTAATGGGAGGACGATACAATTCGCGCGACCTTTTTAGAGATTTGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCATGTTAGTACTGGACTTAAACAAGATGAGATGGAACCTCACATAAGGAAGACTAAACTTCGATTTTACGAGGATGAATCAAAGCATCAAGTAGACAAAAAATGCAGCATTTGTCAGGAGGAGTTTGAAGCAGATGATGAGGTTGGGAGGCTGAAGTGTGATCATTTGTATCACTTTGAATGTATACAAAAATGGGTTGCACACAAAAATTTCTGTCCTGTGTGTAAGGAGCAGGTTGCAGCTAGACATTGA 1059 0.4193 MSSSSVTQTKTEQQHRMKSRKPRNQIKNHHKPISQMDQQTQTTRCNSTISSLLLSTFSNETAVSQQPTTSKKINFLSAAATFRGLGCTAGASQQVSVPAVIRASADWTHQGKKTRKKKHKGNTAGGSSKNSSNEGSSSTCVDFQDVWCGPGIDAAASVDCVVSKKNVSSRAKIDLEKITHREPSSSFRRRTTVYPDTDPDIFTACSFGTATYPRHIRDLSSDDLSEIMLLQGRILMGGRYNSRDLFRDLRLDVDNMSYEQLLELGERIGHVSTGLKQDEMEPHIRKTKLRFYEDESKHQVDKKCSICQEEFEADDEVGRLKCDHLYHFECIQKWVAHKNFCPVCKEQVAARH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0128 352 SMART ring_2 304 344 IPR001841 -
Psa7g0128 352 MobiDBLite consensus disorder prediction 29 44 - -
Psa7g0128 352 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Psa7g0128 352 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 8 352 - -
Psa7g0128 352 CDD RING-H2_PA-TM-RING 304 345 - -
Psa7g0128 352 MobiDBLite consensus disorder prediction 1 44 - -
Psa7g0128 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 350 IPR013083 -
Psa7g0128 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 8 352 IPR045191 GO:0061630
Psa7g0128 352 SUPERFAMILY RING/U-box 294 348 - -
Psa7g0128 352 Pfam Ring finger domain 303 345 IPR001841 -
Psa7g0128 352 MobiDBLite consensus disorder prediction 106 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0128 Psa-Chr7 8882687 8885871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0128 14 259 C3H Transcription Factor Family AT1G73760 40.433 9.14e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0128 - - gmx:100819907 420.239