Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0086 ATGCTAGGTTCATTACCTATACTGCCTCTACCAGCTCCTCCTATCGATGGAAATCTCGGTCCTCTCCCCGAGGCTCAACTCACTCAGGAGGAGGTAGAGGAGAGGAATGAGAAATCCAGCATCCAGGAAGTAGCACCGACATCAGTTGCCACACACACTAGAACTATTGGAATAATTCACCCTCCTCCGGATATTAGAACCATTGTTGATAAAACCTCTCAGTTTGTCGCTAAAAACGGTATTGATTTCGAGAAGAGAATTGTTGCTAATAATGCAGGGAATGCTAAGTTTAATTTTCTCAATTCATCGGATCCTTATCATGCGTATTATCAGCATAGACTGACTGAGTTTCGCGCCCAGAATCAGTCTTCTACTCAACTACCTGGGGATTTGGCTTTACCGGAATCAGCTACACCTGCGCCGGCTACTGATAGTAATAGTAACGATGTAGTCATGACTGAGAAGCCTGATGTTTCTGCCCAGTTTAGACCAGTAAGGAAAGTACTTGATCCTCCTGAGGCTGAACAGTATACAGTTAGGCTTCCTGAAGGAATTACAGGGGAAGAGCTTGATATAATAAAGCTTACAGCACAATTTGTGGCTCGAAATGGGAAATCTTTTTTGACAGGATTGACAAGTAGGGAAATTAATAATCCTCAATTTCATTTCATGAAACCAACCCATAGCATGTTTACATTTTTCACTTCCCTGGCCGATGCGTATTCAAAGGTTTTGATGCCTCCGAAGGGTTTGACGGAGAAACTGAAGAAGAGTGTTCCGGATATGACTACTGTGCTTGAAAGGTGTGTCAATAGGTTGGAATGGGAGCGGTCACAAGAGCAAGCCAGGCAAAAGGCTGAAGATGAGATAGAGCAAGAAAGAATACAAATGGCCATGATTGATTGGCATGATTTTGTGGTGGTTGAATCAATAGATTTTGCTGACGATGAGGATGAAGAATTACCTCCTCCAATGACCCTTGAGGAAGTTATAAGGAGAAGCAAGATTACGCCTATGGAAGAAGATATTGTTGAGCCAGGAAAGGAAGTGGAAATGGAAATGGACGAAGAAGAGGCCCAGCTTGTTGAAGAGGGAATGAGAGCTGCTAGCTTGGAAGACAATGATGAAGTGAAGAAGAATGAAGTCAGGGTTACTGAGGATCCTGAACCACCAATGAGGATTGTGAAGAACTGGAAGAGACCAGAAGACAGGCTTCCTGCAGACAAAGATTCAACCAAATTTGTGGTTTCTCCTATCACTGGTGAACTGATTCCTATTAGTGAAATGTCAGAGCATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGGGAAACCACTTTGGCACAGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTTGGTACTACTGAGGAAGAGGTTTCTAACGCCGTCAAAGCTGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATTTGGGATGGTCACAGTGGTAGTATCGGCCGCACTGCAAACCAAGCAATGTCACAGAATATTGGGATTGAGGATCAAAACGATGCTTCTAATAATGAATTTAAAAACCTCCCTGGTCCTGCTGCACCTCCTCCAAGACCCGGTATGCCTTCAATTCGTCCTCTTCCGCCACCACCTGGACTAGCTTTAAATCTACCCCGTGGTCCTATGAATAACATGCAGTTTTCTAATCCTAACAACAGTGGCTTTCCAATGCCTCCCCCAAGACCACCAGGCATGCACATGATGCAATCTCTCCGACCAGCTCCCCCTCCTCCAATGCAAATGTCCTCTGGACAGCATTCCATGATGGGTGGTCAACCACACCCAATGCATCCATCAATCCCTATGAATAACCAAGGAATTCCTATTCCTCCACCACCTGGATCTCAATTCACTCCTATTCCTGTTCCACGACCTTATGTTCCTCTCTCTCATCCTCCATCAGGGATGCCTATGATGCATCCACCACCTCCGCCTCAAGGATTACCACCACCTCCACCACCCGAGGAAGCTCCTCCCCCACTTCCAGAGGAACCAGAACCCAAGAGGCAGAAGCATGATGATTCTGCTCTGATCCCCGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGTATTAGTATATCGGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACTGTGCAATCTCTGTCTGAAACTGTTGGCGGCCTGAAAGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAACTGAGTGGAAAGCCGGGCTTTCTCAAGGACAATTTGTCTCTCGCACATTACAATCTTAGTGGAGGAGAAACACTCTCCCTTGCATTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2433 0.4492 MLGSLPILPLPAPPIDGNLGPLPEAQLTQEEVEERNEKSSIQEVAPTSVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGIDFEKRIVANNAGNAKFNFLNSSDPYHAYYQHRLTEFRAQNQSSTQLPGDLALPESATPAPATDSNSNDVVMTEKPDVSAQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFMKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKITPMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDEVKKNEVRVTEDPEPPMRIVKNWKRPEDRLPADKDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGIEDQNDASNNEFKNLPGPAAPPPRPGMPSIRPLPPPPGLALNLPRGPMNNMQFSNPNNSGFPMPPPRPPGMHMMQSLRPAPPPPMQMSSGQHSMMGGQPHPMHPSIPMNNQGIPIPPPPGSQFTPIPVPRPYVPLSHPPSGMPMMHPPPPPQGLPPPPPPEEAPPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARISISVPNVDEGNLKGQVLEITVQSLSETVGGLKEKIAGEIQLPANKQKLSGKPGFLKDNLSLAHYNLSGGETLSLALRERGGRKR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0086 810 ProSiteProfiles SURP motif repeat profile. 192 234 IPR000061 GO:0003723|GO:0006396
Psa7g0086 810 Pfam Pre-mRNA splicing factor PRP21 like protein 261 473 IPR022030 -
Psa7g0086 810 SMART surpneu2 66 119 IPR000061 GO:0003723|GO:0006396
Psa7g0086 810 SMART surpneu2 190 243 IPR000061 GO:0003723|GO:0006396
Psa7g0086 810 Gene3D Surp module 52 125 IPR035967 GO:0003723|GO:0006396
Psa7g0086 810 SUPERFAMILY Surp module (SWAP domain) 44 118 IPR035967 GO:0003723|GO:0006396
Psa7g0086 810 SUPERFAMILY Surp module (SWAP domain) 169 242 IPR035967 GO:0003723|GO:0006396
Psa7g0086 810 Gene3D - 699 809 - -
Psa7g0086 810 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 114 IPR045146 GO:0003723|GO:0045292
Psa7g0086 810 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 158 810 IPR045146 GO:0003723|GO:0045292
Psa7g0086 810 Coils Coil 354 374 - -
Psa7g0086 810 PANTHER SPLICING FACTOR 3A, PROTEIN 7 114 - -
Psa7g0086 810 PANTHER SPLICING FACTOR 3A, PROTEIN 158 810 - -
Psa7g0086 810 Coils Coil 276 296 - -
Psa7g0086 810 SMART ubq_7 731 803 IPR000626 GO:0005515
Psa7g0086 810 MobiDBLite consensus disorder prediction 679 723 - -
Psa7g0086 810 MobiDBLite consensus disorder prediction 694 713 - -
Psa7g0086 810 CDD Ubl_SF3a120 723 803 IPR035563 -
Psa7g0086 810 SUPERFAMILY Ubiquitin-like 705 808 IPR029071 -
Psa7g0086 810 MobiDBLite consensus disorder prediction 679 693 - -
Psa7g0086 810 Pfam Surp module 190 241 IPR000061 GO:0003723|GO:0006396
Psa7g0086 810 Pfam Surp module 66 117 IPR000061 GO:0003723|GO:0006396
Psa7g0086 810 ProSiteProfiles Ubiquitin domain profile. 751 807 IPR000626 GO:0005515
Psa7g0086 810 ProSiteProfiles SURP motif repeat profile. 68 110 IPR000061 GO:0003723|GO:0006396
Psa7g0086 810 Pfam Ubiquitin family 738 805 IPR000626 GO:0005515
Psa7g0086 810 Gene3D Surp module 185 243 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0086 Psa-Chr7 6406386 6411197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0086 738 807 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 8.79e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0086 K12825 - gmx:100797261 1169.07