Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0071 ATGATATACAAAGCAATAGAGTCACTAAAAGAGAAAGACGGTTCAAGCAAAAGAGCAATAGGAAAATTCATAGAACAAAACTACGGTAACGTTCTTCCACAACAACACACCACTCTCTTGACTCAACATCTCAACCACTTGAAATCTGCTGGTCTTCTCATCACCTTCAAAAAATCTTACAAACTACCTTCCTCACTCCCCCCACCTCCAACCGTCACTAGATCTGACTCCGAATCTCATCTCCCTTTCACTCCATTAACCCAAAAAGCCCGTGGCCGTCCCCCGAAGCCCAAGCCCGAACTTAATTCCGAACCCGAACTAACTGCCCAGCCGGTTTTCGTTTCTCTAGACCCTCCTACTCACGACGAGCCTCCACCTCCTACAACCACCGTTGGCCCGACTCTAAGCCCGACTGCAAGCCCGACGACTCTATCTGTGAAAAGAGGACGCGGTCGTCCGCCTGGGACCTTCAGATCTAAGTCGCTGAAGAGTACCAGCCGTCCTCCTAAGCCCAAATCTGTGTCGAACGGGCTTAAACGACGACCGGGCCGTCCTCCGAAAAGTCAATCTCAACCGACTGTTATACCTTTTTCAGCTCCTGCTGCTGTTCCTTTTCCTTCTGTTGTGACAGATGGGGTTATAGTACCTGTTGTTAGATCTACCAGGCCCAGAGGCAGGCCCAAGAAGTATGCAGATGACGTGATGTCAGGTCCTCCCACCATGAGGCAGGGTCGTCCTCCCAAGCTTGCTCTCGTTGGTGGGCCCAAGAATCCCTTCCGAAGGCCCGTGGGCCGTCCAAAGGGAGCAAAAGGTGTAAAAAAGTATGCTGATGAAGATCTAAGAAAGAAACTTGAACACTTCCAATCAAAGGTTAAGGAATCTCTTGAAGTGCTTAAGCCTTATTTTGATCATCAAAGTCCAGTGAGTGCAGTTGCAGCAATTCAAGAATTAGAAATCCTGGCAACTCTAGACCTTAAAGCACCATTAAGAGATGAAACACAGCAACAGCAACAACAACACCAACCAGAGCAGTTTCCAGAACAGCTGCCGCTGCAACAACAGCTTCCACCTCAGCAACTGGTTCCGCCGCAGGTGCAGCAGATTTATGAACAGCAGTATCTTCAGATACCATTGCAGCAACAGATTCAGCAACTTTTTCAGCCGCATAATTTAGCTCCAAGCTAA 1185 0.4852 MIYKAIESLKEKDGSSKRAIGKFIEQNYGNVLPQQHTTLLTQHLNHLKSAGLLITFKKSYKLPSSLPPPPTVTRSDSESHLPFTPLTQKARGRPPKPKPELNSEPELTAQPVFVSLDPPTHDEPPPPTTTVGPTLSPTASPTTLSVKRGRGRPPGTFRSKSLKSTSRPPKPKSVSNGLKRRPGRPPKSQSQPTVIPFSAPAAVPFPSVVTDGVIVPVVRSTRPRGRPKKYADDVMSGPPTMRQGRPPKLALVGGPKNPFRRPVGRPKGAKGVKKYADEDLRKKLEHFQSKVKESLEVLKPYFDHQSPVSAVAAIQELEILATLDLKAPLRDETQQQQQQHQPEQFPEQLPLQQQLPPQQLVPPQVQQIYEQQYLQIPLQQQIQQLFQPHNLAPS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0071 394 MobiDBLite consensus disorder prediction 120 195 - -
Psa7g0071 394 MobiDBLite consensus disorder prediction 220 275 - -
Psa7g0071 394 Pfam linker histone H1 and H5 family 1 57 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0071 394 MobiDBLite consensus disorder prediction 64 107 - -
Psa7g0071 394 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677
Psa7g0071 394 PRINTS AT-hook-like domain signature 145 156 IPR017956 GO:0003677
Psa7g0071 394 PRINTS AT-hook-like domain signature 219 229 IPR017956 GO:0003677
Psa7g0071 394 PANTHER HISTONE H1-LIKE 1 339 - -
Psa7g0071 394 SMART h15plus2 1 59 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0071 394 SUPERFAMILY "Winged helix" DNA-binding domain 1 69 IPR036390 -
Psa7g0071 394 PANTHER HISTONE H1 1 339 - -
Psa7g0071 394 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 64 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa7g0071 394 MobiDBLite consensus disorder prediction 330 360 - -
Psa7g0071 394 SMART AT_hook_2 147 159 IPR017956 GO:0003677
Psa7g0071 394 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Psa7g0071 394 SMART AT_hook_2 260 272 IPR017956 GO:0003677
Psa7g0071 394 SMART AT_hook_2 179 191 IPR017956 GO:0003677
Psa7g0071 394 SMART AT_hook_2 221 233 IPR017956 GO:0003677
Psa7g0071 394 Gene3D - 1 75 IPR036388 -
Psa7g0071 394 MobiDBLite consensus disorder prediction 158 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0071 Psa-Chr7 4910463 4913020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0071 1 67 Single Myb Histone (SMH) Gene Family AT1G49950 38.806 1.87e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0071 - - mtr:MTR_8g106980 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0071 7 4910463 4913020 Psa7g0071 7 4910463 4913020 ECH