Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0020 ATGAGCTTGCAACGGAGGGAGAAATGGATTCCTAGATCATCCTCCACTACCGACAACCACAATGGTGCATGTAGCCGCCGAGAGAAGAAACGATTGAATATGAGGGATTCGGATTTAAATTTACCTCAACTGCTGCAAGAGATTCAGGACAAGCTCACCAAAGGCACCGTCGAATGCATGATTTGTTATGACACCGTCAGGAGGTCTGCCCCTATCTGGTCATGCTCCAGTTGCTACTCTATCTTTCACCTCAATTGTACAAACAAGTGGGCTCGGGCACCAACTTCATCTGCATCTGCTGATAACAGCAATCATTGGCGATGCCCCGGTTGTCAAGCTGTGCAACAAACCTCATCCAATTCCATTAGGTACTTCTGCTTCTGTGGGAAGAGGTTTGACCCTCCATCCGATTTATATCTCACACCGCATTCATGTGGAGAGCCGTGCGGGAACCCTCTTCAGAAGACGGGGGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCTCCTTGCAAAGCATTTGCTCCTCCCCGTATGTGCCCTTGTGGCAAGACTACTGTTACAACTCGCTGTTCTGACCACCAAAATCTTCTTACATGCGGCCAACAATGTCAGAAGCTTCTTCAATGTGGCCGCCATCGCTGTGAACAAATTTGTCATATCGGTCCCTGTGATCCTTGCCGTGTTCCAATGGATGCCTCTTGCTTTTGCAGTAAAATGTCCGAGACTATTCTTTGTGGGGACATGGCTGTGAAGGGCGAAATCAAAGCAGAAGGTGGAGTTTTTTCTTGTGCTTCCACTTGTGGAAAGAAACTAAGTTGTGGCAATCATGTCTGTATGGAGATCTGTCATCCGGGCAGCTGTGCTGACTGTGAGTTGCTGCCAGCCCGTGTTAAGATGTGTTGCTGCGGGAAAACTAGATTGAAAGAGGAACGGCAGACTTGTTTAGACCCAATTCCTACCTGTTCACAGCGATGTGGCAAGTTCCTTGCTTGCGGGATGCATCGTTGTAATAAGACATGCCATGATGGAGATTGCTCTCCTTGTCTGGTTTTAGTCTCCCAGAAGTGTCGGTGTGGCTCAACTTCCAGAACGGTGGAGTGCTATAAGACAACAACGGAGGATGACAAGTTTACTTGTGAAAAGCCTTGTGAGAAGAAAAAGAACTGTGGAAGGCATCGTTGTAGTGACCGGTGCTGTCCATTTTCTAATCCAAATAATATTCTAAATGCAGACTGGGATCCGCACCTCTGTTCCATTTCATGTGGAAAGAAATTACGCTGTGGGCAGCATGCGTGTGATTCCCTGTGTCACAGTGGTCATTGTCCACCTTGTCTTCAAACTATATTCACCGATTTGGCATGTGCTTGTGGCAAGACATCAATCCCTCCTCCATTGCCATGTGGTACACCGCTGCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTGGCCACCCAGCCTCCCATAGCTGTCATTATGGAGAATGCCCTCCTTGTTCGGTGCCTGTTGCAAGAGAATGTACTGGCGAACATGTAGTTCTTAGGAACATACCTTGTTCCTCAAAGGATATTCGATGTAATAAGCTCTGCGGGAAGACTAGACAGTGTGGTTTACATGCTTGTGGGAGAACGTGTCACTCCCTGCCGTGTGATAATCAGCCTGCTGTGCAAGGTATTCGAATTTCTTGTGGGCAAACATGTGGCGCTCCAAGGAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCATCTCCATGTCCAGATAGAAGATGTGAATTCCCTGTCACAATCACTTGTACTTGTGGCCGAATAACAACTAACGTCCCTTGTGATGCTGGTGGTAGTAGTGCTGATGTTATACATGAAACTTCAATTGTTCAAAAGATGCCTGTGCCACTTCAACCATTGGATGAAAATGGCAAAAGAGTTTCCCTGGGGCAACGGAAACTGATGTGTAATGATGAGTGTGCTAAGTTGCAGCGCAAAAGGGTACTTGCAAATGCTTTTGAAATTACCGCTCCAAATTTAGATTCTTTCCAATTCGGGGATAATTCTGTTGCTCAGTCTGAATTACTTGGTGATCTATTGAGGCGTGATAGTAAATGGGTTTTATCCGTTGAGGATAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAACTACACATGGTCTAAAAGCCCATGTTTTCTGTCCCATGCTAAAGGATAAGAGAGATGCGGTGAGGATGATTGCAGAGAGATGGAAGCTTGCAATAAATGCAGCTGGTCGGGAGCCAAAGCAATTTATAGTTGTTCATGTTGTCAAAAAATCAAGACCTCCATCACGCGTGCTAGGGATTAAGGGTACTAGAACCACACATGCGCCACTTCCTCCTGCATTTGATCCTTTGGTAGACATGGATCCTCGATTTGTCGTCTCATTTCCAGACTTACCAAGACATGCAGATATCAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGCGAACTTGTTTGGTTAGATGACAAAAATGCATTGGCTGCTTTTAATGGTCCTGCCCGAGCTGCAGCTGCAATGAGAAGATTAGATCATGGAAGTGTTTATCAGGGAGCTATTGTGGTTGTTCCAAAGGTAGGGGCATCTGTAGTATCTTCAGTTACAAATGCGTGGGGAGGAGCTGGGACAGTGAAAGGAGGGGCGCTTGCAGCATGGAAAAAGGCTATTGTTGTAGAACCAAGTTGGAGAGAAGATTCTTGGGATGATGAGGAGGGGGCTACTGGTTCTGCGAATATCCACTCATCTATTTGGAAGAAAGAAGCGCCAATATCTACTTCGGCAAATCCTTGGAGTGTCTTAGATAAAAAATGGTGTTCAAGTTCATCTGCTGCTGCTGCTACGGCAAAGTTGGAATCTCTTGATGGTGGTTCAAATCTAGAACAGCAGCATGGAAAAGCCTTGGACACTTCAGAAGTTTATGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATGA 3018 0.4632 MSLQRREKWIPRSSSTTDNHNGACSRREKKRLNMRDSDLNLPQLLQEIQDKLTKGTVECMICYDTVRRSAPIWSCSSCYSIFHLNCTNKWARAPTSSASADNSNHWRCPGCQAVQQTSSNSIRYFCFCGKRFDPPSDLYLTPHSCGEPCGNPLQKTGDLCPHVCVLQCHPGPCPPCKAFAPPRMCPCGKTTVTTRCSDHQNLLTCGQQCQKLLQCGRHRCEQICHIGPCDPCRVPMDASCFCSKMSETILCGDMAVKGEIKAEGGVFSCASTCGKKLSCGNHVCMEICHPGSCADCELLPARVKMCCCGKTRLKEERQTCLDPIPTCSQRCGKFLACGMHRCNKTCHDGDCSPCLVLVSQKCRCGSTSRTVECYKTTTEDDKFTCEKPCEKKKNCGRHRCSDRCCPFSNPNNILNADWDPHLCSISCGKKLRCGQHACDSLCHSGHCPPCLQTIFTDLACACGKTSIPPPLPCGTPLPSCQLPCSVPQPCGHPASHSCHYGECPPCSVPVARECTGEHVVLRNIPCSSKDIRCNKLCGKTRQCGLHACGRTCHSLPCDNQPAVQGIRISCGQTCGAPRRDCRHTCTAPCHPSSPCPDRRCEFPVTITCTCGRITTNVPCDAGGSSADVIHETSIVQKMPVPLQPLDENGKRVSLGQRKLMCNDECAKLQRKRVLANAFEITAPNLDSFQFGDNSVAQSELLGDLLRRDSKWVLSVEDRCKFLVLGKSRGTTHGLKAHVFCPMLKDKRDAVRMIAERWKLAINAAGREPKQFIVVHVVKKSRPPSRVLGIKGTRTTHAPLPPAFDPLVDMDPRFVVSFPDLPRHADISALVLRFGGECELVWLDDKNALAAFNGPARAAAAMRRLDHGSVYQGAIVVVPKVGASVVSSVTNAWGGAGTVKGGALAAWKKAIVVEPSWREDSWDDEEGATGSANIHSSIWKKEAPISTSANPWSVLDKKWCSSSSAAAATAKLESLDGGSNLEQQHGKALDTSEVYDVVDDWEKACE* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0020 1005 CDD NF-X1-zinc-finger 570 619 - -
Psa7g0020 1005 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 4 1002 IPR034078 GO:0003700
Psa7g0020 1005 ProSiteProfiles Zinc finger PHD-type profile. 56 114 IPR019787 -
Psa7g0020 1005 CDD NF-X1-zinc-finger 327 375 - -
Psa7g0020 1005 Pfam NF-X1 type zinc finger 215 233 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 490 507 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 574 599 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 433 450 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 543 558 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 337 354 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 162 177 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 395 406 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 Pfam NF-X1 type zinc finger 279 296 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 543 572 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 395 425 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 215 234 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 490 508 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 581 602 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 279 298 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 160 178 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 433 452 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 SMART znfxneu3 337 356 IPR000967 GO:0005634|GO:0008270
Psa7g0020 1005 CDD RING-CH-C4HC3_NFX1 58 112 - -
Psa7g0020 1005 ProSiteProfiles Zinc finger RING-type profile. 59 112 IPR001841 -
Psa7g0020 1005 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 4 1002 - -
Psa7g0020 1005 CDD NF-X1-zinc-finger 269 312 - -
Psa7g0020 1005 CDD NF-X1-zinc-finger 145 198 - -
Psa7g0020 1005 MobiDBLite consensus disorder prediction 7 21 - -
Psa7g0020 1005 CDD NF-X1-zinc-finger 205 253 - -
Psa7g0020 1005 ProSitePatterns Zinc finger PHD-type signature. 59 111 IPR019786 -
Psa7g0020 1005 MobiDBLite consensus disorder prediction 1 27 - -
Psa7g0020 1005 CDD NF-X1-zinc-finger 423 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0020 Psa-Chr7 621817 625451 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Psa7g0020 zf-NF-X1 1.4e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0020 K12236 - gmx:106799700 1621.29