Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0009 ATGAATGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAGCACACCAAGATCTTGGAAGGACTTTTAAAGCTGCCTGAAAACAGGGAATGTGCTGATTGCCGGAACAAGGCTCCAAGATGGGCAAGTGTGAACCTAGGGATTTTTATTTGCATGCAATGTTCAGGGATTCACAGAAGCCTTGGAGTGCACATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCGGATCAAGTTTCTTTCATGCAGTTTATGGGTAACGACAAGTCAAATAAGCACTGGGAGACAGATCTTCCACCCAATTTTGACACAAGTAGATTGGAAATTGACAAGTTTATCCGTGCAAAGTATGTAGAGAAAAGATGGGCTTCGAAAAATAAACTAGAATCAACTTCAAAGTTAGCTGAAAATATCGTTAACTTTACTGAGTTGCCATATGGTATTCCGAAGAATAATAGGAGACTTTCCCTTGAAGAAAGCATTTTTGTAAACCACTTGGCACAAGTTTTGCCGCCTGTAACAAGATCTCGTGAGATTCGGGGTTGTTTGGACAAGCAAAAGAAGAGTTCACCTCCATTAAAGAGACCGTCATCCTCCCTGGGCCACATTTGA 618 0.4239 MNGKASISKELNAKHTKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNDKSNKHWETDLPPNFDTSRLEIDKFIRAKYVEKRWASKNKLESTSKLAENIVNFTELPYGIPKNNRRLSLEESIFVNHLAQVLPPVTRSREIRGCLDKQKKSSPPLKRPSSSLGHI* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0009 205 MobiDBLite consensus disorder prediction 182 205 - -
Psa7g0009 205 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Psa7g0009 205 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Psa7g0009 205 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Psa7g0009 205 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Psa7g0009 205 CDD ArfGap 19 119 - -
Psa7g0009 205 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 196 IPR044520 GO:0005096
Psa7g0009 205 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Psa7g0009 205 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Psa7g0009 205 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Psa7g0009 205 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 196 - -
Psa7g0009 205 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0009 Psa-Chr7 287527 288825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0009 19 124 C2H2 Transcription Factor Family AT3G07940 46.429 8.66e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0009 K12486 - gmx:100803735 322.783