Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5587 ATGGAGACCGTTCTTTCCAACCACTCCCCACCTTCTTCTGCTTTCAAGGATGTGAGCAAAGAAGAGGAAGAATCACTACTTGGACAAATTGAAATATGGAAATACATGACACAATTCACCGACTCATTTGCTCTAAAAGCTATTGTTGAGCTACACATAGCTGACATAATCGATAGATATGGTAAACCAATTTCCCTGTCACAAATTGTGCAAAATCTTGAAGATGCACCCACCCCCGATTCTTCTCTTCTCTTAAGAGTAATGAGAGTCATGGTTCGTAGAAAAATTTTCAGTGCAGAAAAATCCGAAACCGGAGAGATTCTCTACGGTTTAACACACGCATCGAAATGGATCCTACAAGACACAAAAATGACATTGGCACCTATGTTGTTGCTAGAGAATCACCCGTTTCATCTGAACCCTAATAACTATATCAGTGAAATTGTACGAGAAGGAACCAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAACGACGGGTTTGGACTCGAAATACAATGAATTGTTTAACCAAGGTATGGTGTGCACTGCTAGGATCATATCTAGGGCTGTTATTGCAGGTTACAGAGATGGGTTTAACCAAATTCAGTCTTTGGTTGATGTTGGTGGTGGTATTGGTGGATCTCTCTCTGAGATTGTTAGAGCTTATCCTCATATTCAAGCTATTAACTTTGATTTACCTCATGTTATTTCAACTGCACCTCAAATTGATGGTATCACCCATATTGAAGGAGACATGTTTGTTTCTGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGGAAGTCAATACCAGAGAAAACAGGAAAGGTGATCATTGTGGATCATGTTTTGGATCCGGAAGGAGCTGAACCATTTACCGACGTTGGCATAGCATTTGACATGTTGCTTCTTGCACATAATGCTGGTGGTAAGGAAAGGACCGAAGAGAACTGGAAATACCTATTCAAAGAGACGGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTTCCATCCATCATTGAGGCGTTTCCAATCTAA 1113 0.4016 METVLSNHSPPSSAFKDVSKEEEESLLGQIEIWKYMTQFTDSFALKAIVELHIADIIDRYGKPISLSQIVQNLEDAPTPDSSLLLRVMRVMVRRKIFSAEKSETGEILYGLTHASKWILQDTKMTLAPMLLLENHPFHLNPNNYISEIVREGTKNGTAFFRCHGHEQFETTGLDSKYNELFNQGMVCTARIISRAVIAGYRDGFNQIQSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVISTAPQIDGITHIEGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKSIPEKTGKVIIVDHVLDPEGAEPFTDVGIAFDMLLLAHNAGGKERTEENWKYLFKETGFPRYNIIKINALPSIIEAFPI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5587 370 CDD AdoMet_MTases 210 307 - -
Psa6g5587 370 Pfam Dimerisation domain 44 92 IPR012967 GO:0046983
Psa6g5587 370 PIRSF O-mtase 12 370 IPR016461 GO:0008168
Psa6g5587 370 Gene3D Vaccinia Virus protein VP39 120 370 IPR029063 -
Psa6g5587 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 369 IPR016461 GO:0008168
Psa6g5587 370 SUPERFAMILY "Winged helix" DNA-binding domain 22 121 IPR036390 -
Psa6g5587 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 367 IPR029063 -
Psa6g5587 370 Pfam O-methyltransferase domain 144 350 IPR001077 GO:0008171
Psa6g5587 370 Gene3D - 14 118 IPR036388 -
Psa6g5587 370 PANTHER O-METHYLTRANSFERASE 20 369 IPR016461 GO:0008168
Psa6g5587 370 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 20 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5587 Psa-Chr6 480031378 480035355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5587 43 356 Monolignol Biosynthesis Gene Families AT5G54160 38.272 1.83e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5587 K22588 - gmx:100812768 643.269