Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5584 ATGGCTGCCGCAGCTGCTTTCAATGTTATATCACCGCCACTATTCTCACTGTCAAATGTTGCAGATACTAGAGCCTTAACAGTCACAGCCTTCAACCCTAACCCTAGAAATATCCCCACTCACCCATGTCTCGGATTCAAATTACGTACCACTAGCAGTATTCTTCCTGCTGCCAGACTCAAAGTCAGGGCGGCCATCGCTAATTCTGACTCAGAGGAAGTAATCGTACAATCAAAAGTGACTCACAAAGTATACTTTGAAATCGGTATTGGAAATCCAGTTGGACAACCTGTCGGAAAGATCGTCATCGGACTCTTCGGCGACGATGTCCCCCAAACTACCGAGAACTTCCGCGCCCTTTGCACCGGCGAGAAGGGCTTTGGCTACAAGAATTCCAACTTCCATCGCGTCATCAAAGATTTCATGATTCAAGGGGGAGATTTCGACAAAGGAAATGGAACGGGCGGCAAGAGTATATATGGTCGCACTTTCAAAGATGAGAATTTTAAACTCTCTCATACTGGACCCGGAACTGTTAGCATGGCAAATGCAGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACCGTCAAGACACAGTGGCTTGATCAGAAACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCGCTAGAGACAGACCGCGGCGATCGTCCACGAAAGCAGGTGGTTATCAATGAATGCGGTGAGCTTCCAATTGCTTGA 750 0.4667 MAAAAAFNVISPPLFSLSNVADTRALTVTAFNPNPRNIPTHPCLGFKLRTTSSILPAARLKVRAAIANSDSEEVIVQSKVTHKVYFEIGIGNPVGQPVGKIVIGLFGDDVPQTTENFRALCTGEKGFGYKNSNFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGTVSMANAGPNTNGSQFFICTVKTQWLDQKHVVFGQVLEGMDIVRLIESLETDRGDRPRKQVVINECGELPIA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5584 249 CDD cyclophilin_ABH_like 82 244 - -
Psa6g5584 249 Gene3D - 71 249 IPR029000 -
Psa6g5584 249 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 56 248 - -
Psa6g5584 249 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 95 245 IPR002130 GO:0000413|GO:0003755
Psa6g5584 249 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 129 146 IPR020892 GO:0003755|GO:0006457
Psa6g5584 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Psa6g5584 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Psa6g5584 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Psa6g5584 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 204 IPR002130 GO:0000413|GO:0003755
Psa6g5584 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 220 IPR002130 GO:0000413|GO:0003755
Psa6g5584 249 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 99 244 IPR002130 GO:0000413|GO:0003755
Psa6g5584 249 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 56 248 - -
Psa6g5584 249 SUPERFAMILY Cyclophilin-like 77 246 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5584 Psa-Chr6 479908601 479910659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5584 99 243 U-box Gene Family AT5G67530 47.945 2.63e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5584 K03768 - gmx:100796688 336.65