Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5556 ATGATTTCAAACTCTGAGATAAATAATATAAGTTACAATGAAAATTCACATTCAACTGAAATAAATCATTGTGCAAAACGTGCAAGGTATGAAGTAGATGAAGATGTAGGGTTTCAAAAGTTCAAAGGTGTTGTTCCACAACAAAATGGTCATTGGGGTGCACAAATTTATGCAAACCATCAAAGAATATGGTTAGGAACATTCAAATCTGAAAAAGATGCTGCCATGGCTTACGACAGTGCCACCGTCAAGCTGAGAAGTGGAGAAAGCCACAGAAACTTTCCATGGAACGACCAAACAGTTCAAGAGCCTTTATTTCAAAGTCGTTATAGCATGGAAAAGGTGCTTAGCATGATTAGAAATGGAACCTATCAAACTAAGTTTTCTACATTTCTTAGGAATCAAAGCCAAAGCATTATTGGGGTGAAGAATGAGGAACAATTTTCATGCATGCAAATTTTTCAAAAGGAGTTAACACCTAGTGATGTTGGTAAACTCAACCGGCTTGTTATCCCTAAAAGACATGCAGTTACGTATTTACCTTTGGTTGGTGGAAACAATAATATAACTAATGATGATGAGGTTGTGTTTTATGACAAACTCATGCGATTGTGGAAGTTTCGATATTGTTATTGGAAAAGTAGCCAAAGCTATGTGTTCACTAGAGGGTGGAATAGGTTTGTGAAGGATAAGAAACTAAAGGCCAAAGACACCATTGTGTTTTATATGTGTCAACCTATAAATTCAACAAAAGAAGGAAATGGACATGTGTTTTCATTGATAGATGTAATCTATAATAATGTCGGGGATAGAAAAAAGCATTACTTTGAAGATGATGAGAATGGAAGGAATGGAAAACTAGATTTAGGGGGAAAAATTATTTGCAATGAATTGGATGATCAAGAGAGTCAAGATAGAATAGATTTGAATGTGTTTCATTCTAAATATGATAATGCACAAAAAGGCTTCAAGCTCTTTGGTGTAAATATTAACTAA 996 0.3464 MISNSEINNISYNENSHSTEINHCAKRARYEVDEDVGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDSATVKLRSGESHRNFPWNDQTVQEPLFQSRYSMEKVLSMIRNGTYQTKFSTFLRNQSQSIIGVKNEEQFSCMQIFQKELTPSDVGKLNRLVIPKRHAVTYLPLVGGNNNITNDDEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYMCQPINSTKEGNGHVFSLIDVIYNNVGDRKKHYFEDDENGRNGKLDLGGKIICNELDDQESQDRIDLNVFHSKYDNAQKGFKLFGVNIN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5556 331 Gene3D AP2/ERF domain 39 96 IPR036955 GO:0003700|GO:0006355
Psa6g5556 331 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 331 IPR044800 GO:0003700
Psa6g5556 331 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 331 - -
Psa6g5556 331 CDD B3_DNA 153 243 IPR003340 GO:0003677
Psa6g5556 331 Gene3D - 150 260 IPR015300 -
Psa6g5556 331 ProSiteProfiles AP2/ERF domain profile. 40 95 IPR001471 GO:0003700|GO:0006355
Psa6g5556 331 SMART rav1_2 40 101 IPR001471 GO:0003700|GO:0006355
Psa6g5556 331 SMART B3_2 154 251 IPR003340 GO:0003677
Psa6g5556 331 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Psa6g5556 331 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Psa6g5556 331 Pfam B3 DNA binding domain 154 245 IPR003340 GO:0003677
Psa6g5556 331 ProSiteProfiles B3 DNA-binding domain profile. 154 264 IPR003340 GO:0003677
Psa6g5556 331 SUPERFAMILY DNA-binding pseudobarrel domain 152 245 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5556 Psa-Chr6 478173829 478174824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5556 40 263 RAV Transcription Factor Family AT1G51120 59.600 7.25e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g5556 B3 2.5e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5556 K09287 - gmx:102660503 360.533