Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5535 ATGGCTTCCAAAAACACATCTTCTCCATTTTCTGAATCCAACATAAAAACACATTCATATAACCTTTCATTATCATCAACTTCTACCAATAATTATGGAAGTCATGTTGCTGGAATAAAAAAAGCAATGAAGATTCTAGAAACTCAATTTGAGAATCCACATGCATCGTCATTATCATCGACTAATAATAATGTTGTTGATAGCTTCAACATCAATAATATGATGATGATGACGATGAATGATACTTCTTTTCATCCCGATCTCATTACAGACTCATCTAAATCACATAGTATGTCATCTCAAACGATTGCTGCTAGTGTTAATGGTGATGGTTATAATGTTCATGTTCGCCCTGATCATAACAAGATCAACAACAACAAGAACAAGAAAAATATTGATGATGGTAGAACGCATAGTTTATCATATAAGAAATATGGACCGTACATTTGCCCAAAGTGCAACCAAGTGTTCGTTACATCTCAAAAATTTGCTTCTCATGCATCAAGTCATTATAAATTCGAAAGTGAAGAAGAGAGGAAAAAGAGATACATGTCCAGAATTCGAAAGAGACCAAAACTTCAAATTCAAAAGCTCAACGATGGAACAACTACTTTGATTCCTATTTCTTCTTCGACTGATTATCTTTCGAAAGTGAAGAAGAGAGGAAAAAGAGATACATGTCCAGAATTCGAAAGAGACCAAAACTTCAAATTCAAAAGCTCAACGATGGAACAACTACTTTGA 744 0.3374 MASKNTSSPFSESNIKTHSYNLSLSSTSTNNYGSHVAGIKKAMKILETQFENPHASSLSSTNNNVVDSFNINNMMMMTMNDTSFHPDLITDSSKSHSMSSQTIAASVNGDGYNVHVRPDHNKINNNKNKKNIDDGRTHSLSYKKYGPYICPKCNQVFVTSQKFASHASSHYKFESEEERKKRYMSRIRKRPKLQIQKLNDGTTTLIPISSSTDYLSKVKKRGKRDTCPEFERDQNFKFKSSTMEQLL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5535 247 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Psa6g5535 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5535 Psa-Chr6 476802201 476803449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5535 125 199 C2H2 Transcription Factor Family AT2G15740 60.000 8.68e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g5535 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5535 - - mtr:MTR_3g084720 171.014